RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA896973" and tax_phylum = "Spirochaetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA896973 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7251283 7251283 PRJNA896973_P_NODE_20466_length_257_cov_1.451087_g20372_i0 PRJNA896973 20466 257 1.451087 3.72929359 Treponema vincentii 69710 Bacteria Bacteria 270 5.93e-68   NTclustered gi|2034589463|gb|CP050497.1| 69710 g20372 i0 88.991 2.61089494163424 218 24 85 0 40 257 2472229 2472446 Treponema vincentii strain OMZ 806 chromosome, complete genome blastn 671 270 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
13997949 13997949 PRJNA896973_P_NODE_29151_length_211_cov_16.181159_g29057_i0 PRJNA896973 29151 211 16.181159 34.14224549 Spirochaetia 203692 Bacteria Bacteria 313 7.7e-81   NTclustered gi|468269|gb|L31543.1|BVNFSRR 34097 g29057 i0 93.365 108.483412322275 211 14 100 0 1 211 13 223 Brevinema andersonii (strain FS47) ribosomal RNA blastn 22890 315 0.993650793650794 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brevinematales Brevinemataceae Brevinema Brevinema andersonii
17451302 17451302 PRJNA896973_P_NODE_18614_length_267_cov_8.077320_g18520_i0 PRJNA896973 18614 267 8.07732 21.5664444 Brevinematales bacterium NS 2979017 Bacteria Bacteria 243 1.3500000000000004e-59   NTclustered gi|2305034691|gb|CP053071.1| 2979017 g18520 i0 83.459 232.423220973783 266 39 99 4 4 267 667662 667924 Brevinematales bacterium NS chromosome, complete genome blastn 62057 243 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brevinematales     Brevinematales bacterium NS

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;