RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA896973" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA896973 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2519642 2519642 PRJNA896973_P_NODE_17802_length_273_cov_0.935000_g17708_i0 PRJNA896973 17802 273 0.935 2.55255 Acidobacterium 33973 Bacteria Bacteria 483 7.5e-132   NTclustered gi|470484216|ref|NR_076636.1| 33075 g17708 i0 98.535 102.201465201465 273 4 100 0 1 273 707 979 Acidobacterium capsulatum strain 161 23S ribosomal RNA gene, complete sequence blastn 27901 483 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Acidobacterium Acidobacterium capsulatum
3424255 3424255 PRJNA896973_S_NODE_2783_length_244_cov_3.070175_g2769_i0 PRJNA896973 2783 244 3.070175 7.491227 Acidobacteriota bacterium 1978231 Bacteria Bacteria 364 2.489999999999999e-96   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g2769 i0 96 131.561475409836 225 8 92 1 17 241 3299054 3299277 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 32101 364 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
8526077 8526077 PRJNA896973_P_NODE_26707_length_243_cov_0.905882_g26613_i0 PRJNA896973 26707 243 0.905882 2.20129326 Candidatus Acidiferrales bacterium 2952895 Bacteria Bacteria 311 3.27e-80   NTclustered gi|2874253786|emb|OY969770.1| 2952895 g26613 i0 90 98.4814814814815 240 24 99 0 4 243 4657673 4657434 MAG: Candidatus Acidoferrales bacterium isolate MFD09222.bin.1.52 genome assembly, chromosome: 1 blastn 23931 311 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales     Candidatus Acidiferrales bacterium
12352141 12352141 PRJNA896973_P_NODE_22850_length_249_cov_0.880682_g22756_i0 PRJNA896973 22850 249 0.880682 2.19289818 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 372 1.52e-98   NTclustered gi|2874254027|emb|OY970352.1| 171953 g22756 i0 93.574 148.21686746988 249 16 100 0 1 249 2365900 2365652 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 blastn 36906 372 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;