RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA896973" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA896973 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3423912 3423912 PRJNA896973_P_NODE_19823_length_260_cov_5.251337_g19729_i0 PRJNA896973 19823 260 5.251337 13.6534762 Fuligo septica 159720 Evosea other_Eukaryota 475 1.1899999999999999e-129   NTclustered gi|381139265|emb|HE655082.1| 159720 g19729 i0 99.615 48.5346153846154 260 1 100 0 1 260 1932 1673 Fuligo septica partial 28S rRNA gene, isolate IW-1 blastn 12619 475 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
8526251 8526251 PRJNA896973_S_NODE_2247_length_265_cov_3.630208_g2233_i0 PRJNA896973 2247 265 3.630208 9.6200512 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 176 1.38e-39   NTclustered gi|300078498|gb|GU001160.1| 5755 g2233 i0 94.783 43.3471698113208 115 3 43 2 152 265 6425 6537 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11487 176 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15271957 15271957 PRJNA896973_P_NODE_9012_length_360_cov_1.303136_g8918_i0 PRJNA896973 9012 360 1.303136 4.6912896 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 573 5.889999999999998e-159   NTclustered gi|399764275|gb|JQ271786.1| 1215995 g8918 i0 95.556 15.2694444444444 360 13 99 3 3 360 19 377 Tubulinea group 04 sp. CAL5 18S ribosomal RNA gene, partial sequence blastn 5497 573 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. CAL5
16175897 16175897 PRJNA896973_P_NODE_20913_length_254_cov_3.198895_g20819_i0 PRJNA896973 20913 254 3.198895 8.1251933 Fuligo septica 159720 Evosea other_Eukaryota 412 9.18e-111   NTclustered gi|37515398|emb|AJ584697.1| 159720 g20819 i0 96.063 1 254 8 100 1 1 254 6511 6260 Fuligo septica 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate NY-1 blastn 254 412 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
16176066 16176066 PRJNA896973_P_NODE_29073_length_220_cov_10.530612_g28979_i0 PRJNA896973 29073 220 10.530612 23.1673464 Fuligo septica 159720 Evosea other_Eukaryota 335 1.7299999999999996e-87   NTclustered gi|37515398|emb|AJ584697.1| 159720 g28979 i0 100 2.57272727272727 181 0 82 0 1 181 13837 14017 Fuligo septica 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate NY-1 blastn 566 335 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
18724486 18724486 PRJNA896973_P_NODE_15015_length_291_cov_2.422018_g14921_i0 PRJNA896973 15015 291 2.422018 7.04807238 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 425 1.38e-114   NTclustered gi|300078498|gb|GU001160.1| 5755 g14921 i0 92.953 1.02405498281787 298 12 100 7 1 291 5926 5631 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 298 425 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;