RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA896758" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA896758 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8525635 8525635 PRJNA896758_P_NODE_22247_length_249_cov_1.136364_g21857_i0 PRJNA896758 22247 249 1.136364 2.82954636 Sycon ciliatum 27933 Porifera other_Eukaryota 67.6 8.05e-7   NTclustered gi|2732917825|ref|XM_065325735.1| 27933 g21857 i0 81.928 8.8433734939759 83 11 33 4 152 232 304 384 PREDICTED: Sycon ciliatum uncharacterized protein DDB_G0271670-like (LOC135812358), partial mRNA blastn 2202 67.6 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
13626596 13626596 PRJNA896758_P_NODE_20071_length_259_cov_1.370968_g19681_i0 PRJNA896758 20071 259 1.370968 3.55080712 Oscarella lobularis 121494 Porifera other_Eukaryota 172 1.7399999999999999e-38   NTclustered gi|2746756347|ref|XM_065982156.1| 121494 g19681 i0 80.263 7.42471042471042 228 45 88 0 2 229 865 1092 PREDICTED: Oscarella lobularis radixin-like (LOC136193293), transcript variant X2, mRNA blastn 1923 172 1 Eukaryota Opisthokonta Metazoa Porifera Homoscleromorpha Homosclerophorida Oscarellidae Oscarella Oscarella lobularis
16175507 16175507 PRJNA896758_P_NODE_10833_length_348_cov_2.458182_g10443_i0 PRJNA896758 10833 348 2.458182 8.55447336 Amphimedon compressa 178514 Porifera other_Eukaryota 126 1.9099999999999994e-24   NTclustered gi|1284883228|gb|KY825184.1| 178514 g10443 i0 80.46 8.61206896551724 174 27 49 5 1 172 3306 3474 Amphimedon compressa voucher MNRJ:18771 internal transcribed spacer 2 and 28S ribosomal RNA gene, partial sequence blastn 2997 126 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon compressa
25470635 25470635 PRJNA896758_P_NODE_15380_length_291_cov_1.091743_g14990_i0 PRJNA896758 15380 291 1.091743 3.17697213 Metazoa 33208 Porifera other_Eukaryota 132 3.37e-26   NTclustered gi|1133452024|ref|XM_003383617.3| 400682 g14990 i0 81.646 1.60137457044674 158 29 54 0 3 160 1052 1209 PREDICTED: Amphimedon queenslandica 26S protease regulatory subunit 8 (LOC100636016), mRNA blastn 466 132 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon queenslandica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;