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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA896758" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA896758 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4701489 4701489 PRJNA896758_P_NODE_8424_length_391_cov_1.261006_g8034_i0 PRJNA896758 8424 391 1.261006 4.93053346 Necator americanus 51031 Nematoda Nematoda 56.5 0.003   NTclustered gi|2707568959|ref|XM_064195980.1| 51031 g8034 i0 100 0.434782608695652 30 0 8 0 168 197 872 901 Necator americanus uncharacterized protein (RB195_009134), partial mRNA blastn 170 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
5976216 5976216 PRJNA896758_P_NODE_6865_length_432_cov_3.891365_g6475_i0 PRJNA896758 6865 432 3.891365 16.8106968 Caenorhabditis remanei 31234 Nematoda Nematoda 176 2.37e-39   NTclustered gi|2445378119|ref|XM_003100380.2| 31234 g6475 i0 86.709 25.3935185185185 158 21 37 0 207 364 194 37 Caenorhabditis remanei uncharacterized protein (GCK72_016568), partial mRNA blastn 10970 176 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
13626697 13626697 PRJNA896758_P_NODE_8031_length_400_cov_11.070336_g7641_i0 PRJNA896758 8031 400 11.070336 44.281344 Strongyloides ratti 34506 Nematoda Nematoda 56.5 0.003   NTclustered gi|1376142617|ref|XM_024651632.1| 34506 g7641 i0 100 0.26 30 0 8 0 254 283 1491 1462 Strongyloides ratti MIP20649p (SRAE_2000076000), partial mRNA blastn 104 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
17450997 17450997 PRJNA896758_P_NODE_14634_length_299_cov_2.561947_g14244_i0 PRJNA896758 14634 299 2.561947 7.66022153 Necator americanus 51031 Nematoda Nematoda 148 3.4499999999999998e-31   NTclustered gi|2707568045|ref|XM_064195547.1| 51031 g14244 i0 82.738 5.49498327759197 168 27 56 2 131 297 407 241 Necator americanus uncharacterized protein (RB195_008849), partial mRNA blastn 1643 148 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
17451028 17451028 PRJNA896758_P_NODE_18394_length_271_cov_1.494949_g18004_i0 PRJNA896758 18394 271 1.494949 4.05131179 Strongyloides ratti 34506 Nematoda Nematoda 235 2.2999999999999997e-57   NTclustered gi|1376134169|ref|XM_024647031.1| 34506 g18004 i0 82.836 88.7047970479705 268 41 99 4 3 269 1075 1338 Strongyloides ratti Heat shock cognate 71 kDa protein (SRAE_1000022300), partial mRNA blastn 24039 235 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
17451096 17451096 PRJNA896758_P_NODE_26734_length_239_cov_2.512048_g26344_i0 PRJNA896758 26734 239 2.512048 6.00379472 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.021   NTclustered gi|2653171|emb|Z82256.1| 6239 g26344 i0 96.774 0.259414225941423 31 1 13 0 190 220 28228 28198 Caenorhabditis elegans Cosmid B0513, complete sequence blastn 62 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
23825053 23825053 PRJNA896758_P_NODE_3779_length_592_cov_1.903661_g3397_i0 PRJNA896758 3779 592 1.903661 11.26967312 Caenorhabditis elegans 6239 Nematoda Nematoda 259 3.21e-64   NTclustered gi|1734332162|ref|NM_070257.4| 6239 g3397 i0 80.403 33.5472972972973 347 62 58 5 136 479 435 92 Caenorhabditis elegans NIF system FeS cluster assembly NifU N-terminal domain-containing protein (iscu-1), mRNA blastn 19860 259 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
25470653 25470653 PRJNA896758_P_NODE_18980_length_267_cov_1.304124_g18590_i0 PRJNA896758 18980 267 1.304124 3.48201108 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 56.5 0.002   NTclustered gi|339248614|ref|XM_003373247.1| 6334 g18590 i0 100 0.224719101123595 30 0 11 0 205 234 1031 1060 Trichinella spiralis hypothetical protein (Tsp_10135) mRNA, complete cds blastn 60 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;