RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA896758" and tax_phylum = "Myxococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA896758 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17451126 17451126 PRJNA896758_P_NODE_9634_length_367_cov_2.744898_g9244_i0 PRJNA896758 9634 367 2.744898 10.07377566 Labilithrix luteola 1391654 Bacteria Bacteria 473 6.279999999999999e-129   NTclustered gi|913610804|gb|CP012333.1| 1391654 g9244 i0 89.946 195.983651226158 368 35 99 1 2 367 3943241 3942874 Labilithrix luteola strain DSM 27648, complete genome blastn 71926 473 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
18724221 18724221 PRJNA896758_P_NODE_10675_length_351_cov_1.086331_g10285_i0 PRJNA896758 10675 351 1.086331 3.81302181 Labilithrix luteola 1391654 Bacteria Bacteria 599 9.45e-167   NTclustered gi|913610804|gb|CP012333.1| 1391654 g10285 i0 97.436 153.136752136752 351 9 100 0 1 351 3942509 3942859 Labilithrix luteola strain DSM 27648, complete genome blastn 53751 599 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
23825068 23825068 PRJNA896758_P_NODE_5859_length_470_cov_1.790932_g5470_i0 PRJNA896758 5859 470 1.790932 8.4173804 Myxococcales bacterium 2026763 Bacteria Bacteria 490 8.17e-134   NTclustered gi|2258824976|gb|CP060221.1| 2026763 g5470 i0 85.745 80.6617021276596 470 60 99 7 1 467 1312454 1312919 MAG: Myxococcales bacterium isolate HK-STAS-MYXO-35 chromosome, complete genome blastn 37911 490 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;