RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA896758" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA896758 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1243926 1243926 PRJNA896758_P_NODE_26761_length_237_cov_2.695122_g26371_i0 PRJNA896758 26761 237 2.695122 6.38743914 Flabellinia 1485085 Discosea other_Eukaryota 361 3.1099999999999996e-95   NTclustered gi|821391666|gb|KP862847.1| 1654810 g26371 i0 94.093 100.556962025316 237 14 100 0 1 237 475 711 Cunea thuwala isolate RS14G2.1 haplotype 1 actin gene, partial cds blastn 23832 361 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Cunea Cunea thuwala
3423651 3423651 PRJNA896758_P_NODE_25683_length_243_cov_0.905882_g25293_i0 PRJNA896758 25683 243 0.905882 2.20129326 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 139 1.63e-28   NTclustered gi|470487952|ref|XM_004344699.1| 1257118 g25293 i0 77.489 10.9094650205761 231 52 95 0 3 233 481 711 Acanthamoeba castellanii str. Neff phosphoribosylpyrophosphate synthetase (ACA1_280600), partial mRNA blastn 2651 139 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4701455 4701455 PRJNA896758_P_NODE_4044_length_568_cov_2.014141_g3660_i0 PRJNA896758 4044 568 2.014141 11.44032088 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 425 2.87e-114   NTclustered gi|470467440|ref|XM_004341747.1| 1257118 g3660 i0 84.941 73.3978873239437 425 59 74 4 147 567 696 273 Acanthamoeba castellanii str. Neff guanine nucleotide-binding protein beta subunit, putative (ACA1_199990), partial mRNA blastn 41690 425 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5976226 5976226 PRJNA896758_P_NODE_8545_length_388_cov_0.977778_g8155_i0 PRJNA896758 8545 388 0.977778 3.79377864 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 250 1.22e-61   NTclustered gi|470380148|ref|XM_004333613.1| 1257118 g8155 i0 79.42 0.97680412371134 379 59 96 14 1 371 340 707 Acanthamoeba castellanii str. Neff actin bundling protein (ACA1_260120), partial mRNA blastn 379 250 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11076310 11076310 PRJNA896758_P_NODE_14769_length_298_cov_1.368889_g14379_i0 PRJNA896758 14769 298 1.368889 4.07928922 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 357 5.24e-94   NTclustered gi|470420192|ref|XM_004337221.1| 1257118 g14379 i0 88.255 101.667785234899 298 35 100 0 1 298 633 336 Acanthamoeba castellanii str. Neff actin-1, putative (ACA1_219820), partial mRNA blastn 30297 357 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22549631 22549631 PRJNA896758_P_NODE_16618_length_283_cov_1.457143_g16228_i0 PRJNA896758 16618 283 1.457143 4.12371469 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 261 3.99e-65   NTclustered gi|470383613|ref|XM_004333927.1| 1257118 g16228 i0 84.733 40.9964664310954 262 38 92 2 3 263 528 788 Acanthamoeba castellanii str. Neff extracellular response kinase, putative (ACA1_400280), partial mRNA blastn 11602 261 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23824941 23824941 PRJNA896758_P_NODE_13659_length_311_cov_1.941176_g13269_i0 PRJNA896758 13659 311 1.941176 6.03705736 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 244 4.47e-60   NTclustered gi|470455615|ref|XM_004340928.1| 1257118 g13269 i0 83.922 72.2636655948553 255 41 82 0 57 311 417 163 Acanthamoeba castellanii str. Neff ribosomal protein S23 (S12), putative (ACA1_232480), partial mRNA blastn 22474 244 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23825039 23825039 PRJNA896758_P_NODE_25859_length_242_cov_0.911243_g25469_i0 PRJNA896758 25859 242 0.911243 2.20520806 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 132 2.7200000000000003e-26   NTclustered gi|470460327|ref|XM_004341401.1| 1257118 g25469 i0 83.333 5.59090909090909 144 22 59 2 2 144 720 578 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_265890), partial mRNA blastn 1353 132 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;