RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA896758" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA896758 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
872799 872799 PRJNA896758_P_NODE_15561_length_290_cov_1.036866_g15171_i0 PRJNA896758 15561 290 1.036866 3.0069114 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 198 3.26e-46   NTclustered gi|2386260881|ref|XM_001457120.2| 5888 g15171 i0 83.028 21.2931034482759 218 37 75 0 71 288 270 53 Paramecium tetraurelia uncharacterized protein (GSPATT00022933001), mRNA blastn 6175 198 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
4701342 4701342 PRJNA896758_P_NODE_14284_length_304_cov_1.333333_g13894_i0 PRJNA896758 14284 304 1.333333 4.05333232 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 196 1.24e-45   NTclustered gi|471220695|ref|XM_004027253.1| 5932 g13894 i0 82.589 0.736842105263158 224 37 73 2 81 303 538 316 Ichthyophthirius multifiliis ras oncogene family protein, putative (IMG5_185400) mRNA, complete cds blastn 224 196 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
9800608 9800608 PRJNA896758_P_NODE_1308_length_1010_cov_3.150480_g1014_i0 PRJNA896758 1308 1010 3.15048 31.819848 Opisthonecta henneguyi 6026 SAR_Eukaryotes SAR_Eukaryotes 780 0   NTclustered gi|4063597|gb|AF056109.1| 6026 g1014 i0 81.703 67.5346534653465 951 160 93 14 66 1009 1232 289 Telotrochidium henneguyii translation elongation factor 1-alpha (TEF1) gene, partial cds blastn 68210 780 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Opisthonectidae Opisthonecta Opisthonecta henneguyi
12351737 12351737 PRJNA896758_P_NODE_11550_length_338_cov_1.615094_g11160_i0 PRJNA896758 11550 338 1.615094 5.45901772 Rimostrombidium veniliae 702563 SAR_Eukaryotes SAR_Eukaryotes 375 1.6699999999999995e-99   NTclustered gi|759083337|gb|KM221993.1| 702563 g11160 i0 86.686 99.7988165680473 338 45 100 0 1 338 676 1013 Rimostrombidium veniliae voucher LWW2007042901 alpha-tubulin gene, partial cds blastn 33732 375 1 Eukaryota Sar   Ciliophora Spirotrichea Choreotrichida Strobilidiidae Rimostrombidium Rimostrombidium veniliae
13626545 13626545 PRJNA896758_P_NODE_13351_length_315_cov_1.210744_g12961_i0 PRJNA896758 13351 315 1.210744 3.8138435999999998 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 176 1.68e-39   NTclustered gi|10145|emb|X16019.1| 5949 g12961 i0 81.166 12.4031746031746 223 38 70 4 1 221 524 304 S.lemnae histone H4 gene (clone H4g) blastn 3907 176 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
13626550 13626550 PRJNA896758_P_NODE_14491_length_301_cov_1.688596_g14101_i0 PRJNA896758 14491 301 1.688596 5.08267396 uncultured Peritrichia 282477 SAR_Eukaryotes SAR_Eukaryotes 556 4.87e-154   NTclustered gi|1354561742|gb|MH023111.1| 282477 g14101 i0 100 100.441860465116 301 0 100 0 1 301 330 30 Uncultured Peritrichia clone OTU698 small subunit ribosomal RNA gene, partial sequence blastn 30233 556 1 Eukaryota Sar   Ciliophora Oligohymenophorea       uncultured Peritrichia
14900711 14900711 PRJNA896758_P_NODE_12892_length_320_cov_1.510121_g12502_i0 PRJNA896758 12892 320 1.510121 4.8323872 Stentor coeruleus 5963 SAR_Eukaryotes SAR_Eukaryotes 520 6.849999999999999e-143   NTclustered gi|3550265|gb|AF079840.1|AF079840 5963 g12502 i0 97.403 5.15625 308 3 95 4 1 304 307 1 Stentor coeruleus G protein alpha GS-like subunit mRNA, partial cds blastn 1650 520 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Stentoridae Stentor Stentor coeruleus
15271866 15271866 PRJNA896758_P_NODE_3512_length_613_cov_3.335185_g3131_i0 PRJNA896758 3512 613 3.335185 20.44468405 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 691 0   NTclustered gi|9756|emb|Z11763.1| 5947 g3131 i0 87.667 86.3572593800979 600 66 97 7 18 613 1536 941 O.granulifera gene for alpha-tubulin blastn 52937 691 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Oxytricha Oxytricha granulifera
18724279 18724279 PRJNA896758_P_NODE_19615_length_262_cov_2.433862_g19225_i0 PRJNA896758 19615 262 2.433862 6.37671844 Uroleptus gallina 57513 SAR_Eukaryotes SAR_Eukaryotes 318 2.1299999999999995e-82   NTclustered gi|21215215|gb|AF510209.1| 57513 g19225 i0 88.636 95.5381679389313 264 26 100 4 1 262 971 710 Uroleptus gallina beta-tubulin gene, complete cds blastn 25031 318 1 Eukaryota Sar   Ciliophora Spirotrichea Urostylida Urostylidae Uroleptus Uroleptus gallina
19999510 19999510 PRJNA896758_P_NODE_9256_length_375_cov_1.122517_g8866_i0 PRJNA896758 9256 375 1.122517 4.20943875 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 254 9.12e-63   NTclustered gi|74834194|emb|CR933372.1| 5888 g8866 i0 80.226 33.5226666666667 354 56 93 11 10 356 1038 692 Cytosol-type hsp70, Paramecium tetraurelia macronuclear gene blastn 12571 254 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
20370262 20370262 PRJNA896758_P_NODE_17436_length_277_cov_1.887255_g17046_i0 PRJNA896758 17436 277 1.887255 5.22769635 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 217 8.539999999999999e-52   NTclustered gi|310869|gb|L18892.1| 5911 g17046 i0 84.545 66.8483754512635 220 32 79 2 16 234 283 501 Tetrahymena thermophila histone H2A.X (H2A.X) gene, complete cds; macronuclear blastn 18517 217 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;