RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA896758" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA896758 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13997837 13997837 PRJNA896758_P_NODE_19651_length_262_cov_1.629630_g19261_i0 PRJNA896758 19651 262 1.62963 4.2696306 root 1 Root_unresolved Root_unresolved 484 1.99e-132   NTclustered gi|436492|gb|U00707.1|PSU00707 33866 g19261 i0 100 9.94656488549618 262 0 100 0 1 262 1595 1334 Pyrococcus sp. Deep Vent DNA polymerase precursor gene, complete cds blastn 2606 484 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus sp.
21274724 21274724 PRJNA896758_P_NODE_17757_length_275_cov_1.524752_g17367_i0 PRJNA896758 17757 275 1.524752 4.193068 uncultured marine group II/III euryarchaeote KM3_31_G10 1456433 Archaea Archaea 52.8 0.025   NTclustered gi|663518287|gb|KF900839.1| 1456433 g17367 i0 100 0.101818181818182 28 0 10 0 50 77 35771 35798 Uncultured marine group II/III euryarchaeote KM3_31_G10 genomic sequence blastn 28 52.8 1 Archaea   Methanobacteriati Methanobacteriota         uncultured marine group II/III euryarchaeote KM3_31_G10
22549592 22549592 PRJNA896758_P_NODE_11598_length_338_cov_0.867925_g11208_i0 PRJNA896758 11598 338 0.867925 2.9335865 Salinilacihabitans rarus 2961596 Archaea Archaea 62.1 5.3e-5   NTclustered gi|2273363716|gb|CP100762.1| 2961596 g11208 i0 91.111 2.5414201183432 45 4 13 0 173 217 3215934 3215978 Salinilacihabitans rarus strain AD-4 chromosome, complete genome blastn 859 62.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Salinilacihabitans Salinilacihabitans rarus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;