RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA896758" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 8 ✖

bioproject 1

  • PRJNA896758 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
872773 872773 PRJNA896758_P_NODE_12101_length_331_cov_1.112403_g11711_i0 PRJNA896758 12101 331 1.112403 3.68205393 Chlamydomonas incerta 51695 Plants Plants 187 8.189999999999998e-43   NTclustered gi|74272706|gb|DQ122918.1| 51695 g11711 i0 83.663 70.0030211480363 202 29 60 4 20 219 520 321 Chlamydomonas incerta S-adenosyl-L-methionine synthetase (SAMS) mRNA, partial cds blastn 23171 187 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
1243915 1243915 PRJNA896758_P_NODE_24161_length_246_cov_0.890173_g23771_i0 PRJNA896758 24161 246 0.890173 2.18982558 Halofilum 1929135 Plants Plants 455 1.4500000000000002e-123   NTclustered gi|1189013853|gb|MF034634.1| 97102 g23771 i0 100 101.272357723577 246 0 100 0 1 246 1430 1185 Halofilum salinum strain SAG 1.95 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 24913 455 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales   Halofilum Halofilum salinum
1243931 1243931 PRJNA896758_P_NODE_5161_length_500_cov_1.857143_g4772_i0 PRJNA896758 5161 500 1.857143 9.285715 Eukaryota 2759 Plants Plants 54.7 0.014   NTclustered gi|2082258891|ref|XM_043067628.1| 3055 g4772 i0 88.636 0.612 44 5 9 0 293 336 4402 4359 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_11g476100v5), mRNA blastn 306 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
5976194 5976194 PRJNA896758_P_NODE_3965_length_574_cov_2.668663_g3583_i0 PRJNA896758 3965 574 2.668663 15.31812562 Pedinomonas sp. UTEX 'LB 1027' 1108795 Plants Plants 250 1.87e-61   NTclustered gi|371782101|emb|HE610133.1| 1108795 g3583 i0 79.683 31.8780487804878 379 52 64 18 1 366 4726 5092 Pedinomonas sp. UTEX 1027 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 1027 blastn 18298 250 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae Pedinomonadales Pedinomonadaceae Pedinomonas Pedinomonas sp. UTEX 'LB 1027'
7621938 7621938 PRJNA896758_P_NODE_12326_length_328_cov_0.925490_g11936_i0 PRJNA896758 12326 328 0.92549 3.0356072 Bryopsis 3128 Plants Plants 281 3.61e-71   NTclustered gi|969822372|gb|KT950953.1| 3129 g11936 i0 82.911 94.6585365853659 316 50 96 4 12 325 740 427 Bryopsis maxima actin gene, partial cds blastn 31048 281 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis maxima
14900805 14900805 PRJNA896758_P_NODE_25352_length_243_cov_0.905882_g24962_i0 PRJNA896758 25352 243 0.905882 2.20129326 Stichococcus bacillaris 37433 Plants Plants 313 9.1e-81   NTclustered gi|371782093|emb|HE610125.1| 37433 g24962 i0 96.316 17.1646090534979 190 7 78 0 54 243 7182 6993 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 4171 313 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
19999499 19999499 PRJNA896758_P_NODE_6716_length_437_cov_3.214286_g6326_i0 PRJNA896758 6716 437 3.214286 14.04642982 Chlorella variabilis 554065 Plants Plants 255 3e-63   NTclustered gi|552813385|ref|XM_005843877.1| 554065 g6326 i0 81.731 17.6064073226545 312 52 71 5 63 372 1369 1061 Chlorella variabilis hypothetical protein (CHLNCDRAFT_59785) mRNA, complete cds blastn 7694 255 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
25098889 25098889 PRJNA896758_P_NODE_25480_length_243_cov_0.905882_g25090_i0 PRJNA896758 25480 243 0.905882 2.20129326 Hazenia capsulata 2202518 Plants Plants 363 8.909999999999999e-96   NTclustered gi|2724824830|gb|PP746569.1| 2202518 g25090 i0 93.827 6.0082304526749 243 12 100 3 1 243 21060 21299 Hazenia capsulata culture UTEX:1918 mitochondrion, complete genome blastn 1460 363 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Hazeniaceae Hazenia Hazenia capsulata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;