RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA896758" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA896758 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2148185 2148185 PRJNA896758_P_NODE_22622_length_249_cov_0.863636_g22232_i0 PRJNA896758 22622 249 0.863636 2.15045364 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 154 6.01e-33   NTclustered gi|551570707|ref|XM_005771218.1| 280463 g22232 i0 81.443 28.144578313253 194 30 77 5 1 191 714 524 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 7008 154 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
11076294 11076294 PRJNA896758_P_NODE_11789_length_335_cov_1.175573_g11399_i0 PRJNA896758 11789 335 1.175573 3.93816955 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 235 2.92e-57   NTclustered gi|551619282|ref|XM_005790173.1| 280463 g11399 i0 84.746 16.1283582089552 236 34 70 2 100 334 1135 901 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 5403 235 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
23824960 23824960 PRJNA896758_P_NODE_17199_length_279_cov_1.427184_g16809_i0 PRJNA896758 17199 279 1.427184 3.98184336 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 110 1.5e-19   NTclustered gi|551583056|ref|XM_005776908.1| 280463 g16809 i0 85.577 0.745519713261649 104 15 37 0 160 263 382 279 Emiliania huxleyi CCMP1516 hypothetical protein mRNA blastn 208 110 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;