RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA896758" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA896758 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
872957 872957 PRJNA896758_P_NODE_9681_length_366_cov_4.525597_g9291_i0 PRJNA896758 9681 366 4.525597 16.56368502 Thecamonas trahens 529818 Root_unresolved Root_unresolved 254 8.87e-63   NTclustered gi|923130274|ref|XM_013903149.1| 461836 g9291 i0 88.942 75.4972677595628 208 19 56 4 130 335 258 53 Thecamonas trahens ATCC 50062 14-3-3 family protein epsilon (AMSG_04940), partial mRNA blastn 27632 254 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
11076359 11076359 PRJNA896758_P_NODE_20849_length_253_cov_1.255556_g20459_i0 PRJNA896758 20849 253 1.255556 3.17655668 Thecamonas trahens 529818 Root_unresolved Root_unresolved 113 1.04e-20   NTclustered gi|923132900|ref|XM_013904462.1| 461836 g20459 i0 82.443 1.09881422924901 131 21 51 2 1 130 324 453 Thecamonas trahens ATCC 50062 ribosomal protein L23a (AMSG_03569), mRNA blastn 278 113 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
14900702 14900702 PRJNA896758_P_NODE_11312_length_341_cov_5.529851_g10922_i0 PRJNA896758 11312 341 5.529851 18.85679191 Thecamonas trahens 529818 Root_unresolved Root_unresolved 154 8.59e-33   NTclustered gi|923125900|ref|XM_013900964.1| 461836 g10922 i0 89.344 10.0175953079179 122 13 36 0 179 300 156 35 Thecamonas trahens ATCC 50062 60S ribosomal protein L39 (AMSG_06579), partial mRNA blastn 3416 154 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
25098918 25098918 PRJNA896758_P_NODE_4940_length_512_cov_1.553531_g4552_i0 PRJNA896758 4940 512 1.553531 7.95407872 Thecamonas trahens 529818 Root_unresolved Root_unresolved 318 4.4799999999999996e-82   NTclustered gi|923130274|ref|XM_013903149.1| 461836 g4552 i0 90.756 44.208984375 238 22 46 0 1 238 505 742 Thecamonas trahens ATCC 50062 14-3-3 family protein epsilon (AMSG_04940), partial mRNA blastn 22635 318 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;