RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA896554" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA896554 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2144924 2144924 PRJNA896554_P_NODE_108962_length_311_cov_1.915966_g101422_i0 PRJNA896554 108962 311 1.915966 5.95865426 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 54.7 0.008   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g101422 i0 100 0.0932475884244373 29 0 9 0 154 182 550350 550322 Gemmatimonas phototrophica strain AP64, complete genome blastn 29 54.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
5974146 5974146 PRJNA896554_P_NODE_165325_length_245_cov_0.895349_g157785_i0 PRJNA896554 165325 245 0.895349 2.19360505 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 215 2.67e-51   NTclustered gi|2874253978|emb|OY970303.1| 412054 g157785 i0 82.52 4.5469387755102 246 41 100 2 1 245 6075577 6075821 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 1114 215 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
16174655 16174655 PRJNA896554_P_NODE_64593_length_496_cov_2.475177_g57058_i0 PRJNA896554 64593 496 2.475177 12.27687792 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 361 7.089999999999999e-95   NTclustered gi|2874253755|emb|OY969695.1| 412054 g57058 i0 82.759 204.858870967742 406 68 81 2 91 494 254523 254118 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 101610 361 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;