RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA896554" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA896554 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13623610 13623610 PRJNA896554_P_NODE_125291_length_283_cov_1.342857_g117751_i0 PRJNA896554 125291 283 1.342857 3.80028531 Candidatus Acidiferrales bacterium 2952895 Bacteria Bacteria 209 1.46e-49   NTclustered gi|2874253721|emb|OY969563.1| 2952895 g117751 i0 80.216 2.54770318021201 278 55 98 0 1 278 3141936 3142213 MAG: Candidatus Acidoferrales bacterium isolate MFD05580.bin.1.43 genome assembly, chromosome: 1 blastn 721 209 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales     Candidatus Acidiferrales bacterium
16173706 16173706 PRJNA896554_P_NODE_171493_length_242_cov_1.366864_g163953_i0 PRJNA896554 171493 242 1.366864 3.30781088 Acidisarcina polymorpha 2211140 Bacteria Bacteria 139 1.63e-28   NTclustered gi|1431854037|gb|CP030840.1| 2211140 g163953 i0 79.024 15.900826446281 205 41 84 2 37 240 3842040 3842243 Acidisarcina polymorpha strain SBC82 chromosome, complete genome blastn 3848 139 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Acidisarcina Acidisarcina polymorpha
17448246 17448246 PRJNA896554_P_NODE_132114_length_273_cov_1.540000_g124574_i0 PRJNA896554 132114 273 1.54 4.2042 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 159 1.4399999999999999e-34   NTclustered gi|2874253836|emb|OY969886.1| 171953 g124574 i0 81.25 11.3809523809524 208 30 73 7 72 271 2920189 2920395 MAG: uncultured Acidobacteriota bacterium isolate MFD10007.bin.c.1 genome assembly, chromosome: 1 blastn 3107 159 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
19996212 19996212 PRJNA896554_P_NODE_109416_length_310_cov_2.518987_g101876_i0 PRJNA896554 109416 310 2.518987 7.8088597 Candidatus Acidiferrales bacterium 2952895 Bacteria Bacteria 243 1.6000000000000004e-59   NTclustered gi|2874253721|emb|OY969563.1| 2952895 g101876 i0 83.462 2.09354838709677 260 43 84 0 13 272 6283090 6282831 MAG: Candidatus Acidoferrales bacterium isolate MFD05580.bin.1.43 genome assembly, chromosome: 1 blastn 649 243 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales     Candidatus Acidiferrales bacterium
22547421 22547421 PRJNA896554_P_NODE_152558_length_250_cov_0.870056_g145018_i0 PRJNA896554 152558 250 0.870056 2.17514 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 169 2.15e-37   NTclustered gi|2874253950|emb|OY970275.1| 171953 g145018 i0 79.216 1.52 255 43 100 8 1 250 302794 303043 MAG: uncultured Acidobacteriota bacterium isolate MFD03399.bin.c.2 genome assembly, chromosome: 1 blastn 380 169 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
25096782 25096782 PRJNA896554_P_NODE_162300_length_246_cov_0.890173_g154760_i0 PRJNA896554 162300 246 0.890173 2.18982558 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 195 3.49e-45   NTclustered gi|2874254049|emb|OY970373.1| 171953 g154760 i0 84.5 25.8292682926829 200 27 80 3 1 198 6439312 6439115 MAG: uncultured Acidobacteriota bacterium isolate MFD09368.bin.c.1 genome assembly, chromosome: 1 blastn 6354 195 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;