RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA896554" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA896554 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8523657 8523657 PRJNA896554_P_NODE_165147_length_245_cov_0.895349_g157607_i0 PRJNA896554 165147 245 0.895349 2.19360505 Deinococcus aetherius 200252 Bacteria Bacteria 320 5.49e-83   NTclustered gi|2281899410|dbj|AP026563.1| 200252 g157607 i0 90.204 2 245 24 100 0 1 245 163541 163785 Deinococcus aetherius ST0316 plasmid pDAETH-3 DNA, complete genome blastn 490 320 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aetherius
11074568 11074568 PRJNA896554_P_NODE_175589_length_241_cov_0.916667_g168049_i0 PRJNA896554 175589 241 0.916667 2.20916747 Deinococcus ficus 317577 Bacteria Bacteria 316 6.97e-82   NTclustered gi|1220364820|gb|CP021082.1| 317577 g168049 i0 92.14 9.68879668049792 229 11 94 6 16 241 383868 383644 Deinococcus ficus strain CC-FR2-10 plasmid pDFI1, complete sequence blastn 2335 316 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus ficus
19997382 19997382 PRJNA896554_P_NODE_159616_length_247_cov_0.885057_g152076_i0 PRJNA896554 159616 247 0.885057 2.18609079 Thermus thermophilus 274 Bacteria Bacteria 429 8.83e-116   NTclustered gi|2199613144|dbj|AP025597.1| 274 g152076 i0 97.976 19.0202429149798 247 5 100 0 1 247 36409 36655 Thermus thermophilus SNM1-1 plasmid pTthSNM1-1b DNA, complete sequence blastn 4698 429 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus thermophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;