RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA896554" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA896554 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11074623 11074623 PRJNA896554_P_NODE_177809_length_230_cov_2.452229_g170269_i0 PRJNA896554 177809 230 2.452229 5.6401267 Chlorella variabilis 554065 Plants Plants 52.8 0.021   NTclustered gi|552842889|ref|XM_005850623.1| 554065 g170269 i0 96.774 0.134782608695652 31 1 13 0 50 80 5713 5743 Chlorella variabilis hypothetical protein (CHLNCDRAFT_140752) mRNA, complete cds blastn 31 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
17821242 17821242 PRJNA896554_P_NODE_113454_length_302_cov_5.275109_g105914_i0 PRJNA896554 113454 302 5.275109 15.93082918 Eukaryota 2759 Plants Plants 558 1.36e-154   NTclustered gi|1714003650|gb|MN243923.1| 3079 g105914 i0 100 100.006622516556 302 0 100 0 1 302 527 828 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 30202 558 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
20370062 20370062 PRJNA896554_P_NODE_135196_length_269_cov_1.367347_g127656_i0 PRJNA896554 135196 269 1.367347 3.67816343 Coccomyxa 41891 Plants Plants 387 5.95e-103   NTclustered gi|1601875646|gb|MK694759.1| 2315456 g127656 i0 93.208 98.8884758364312 265 15 99 3 1 265 3886 4147 Coccomyxa sp. Obi small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 26601 387 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa sp. Obi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;