RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA896554" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA896554 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5972965 5972965 PRJNA896554_P_NODE_115165_length_299_cov_2.044248_g107625_i0 PRJNA896554 115165 299 2.044248 6.11230152 Dictyostelium discoideum 44689 Evosea other_Eukaryota 62.1 4.62e-5   NTclustered gi|66810116|ref|XM_633690.1| 352472 g107625 i0 75.806 0.983277591973244 124 28 41 2 162 284 1403 1281 Dictyostelium discoideum AX4 protein kinase 4 (DDB_G0284029) mRNA, partial cds blastn 294 62.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
7621827 7621827 PRJNA896554_P_NODE_166126_length_244_cov_2.076023_g158586_i0 PRJNA896554 166126 244 2.076023 5.06549612 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 60.2 1.32e-4   NTclustered gi|831766796|ref|XM_012896450.1| 1410327 g158586 i0 88 1.14754098360656 50 6 20 0 67 116 402 353 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 280 60.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
17449738 17449738 PRJNA896554_P_NODE_47534_length_714_cov_2.394696_g40190_i0 PRJNA896554 47534 714 2.394696 17.09812944 Cavenderia fasciculata 261658 Evosea other_Eukaryota 588 4.3999999999999996e-163   NTclustered gi|470237759|ref|XM_004350786.1| 261658 g40190 i0 81.513 96.7647058823529 714 132 100 0 1 714 265 978 Cavenderia fasciculata actin (DFA_11894), partial mRNA blastn 69090 588 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
18723612 18723612 PRJNA896554_P_NODE_74975_length_425_cov_2.017045_g67435_i0 PRJNA896554 74975 425 2.017045 8.57244125 Planoprotostelium aurantium 65008 Evosea other_Eukaryota 366 1.29e-96   NTclustered gi|2367628|gb|AF016241.1| 65008 g67435 i0 82.311 97.1552941176471 424 73 99 2 3 425 563 141 Planoprotostelium aurantium protein synthesis elongation factor 1-alpha (tef2) gene, partial cds blastn 41291 366 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium aurantium
21271284 21271284 PRJNA896554_P_NODE_104017_length_322_cov_1.236948_g96477_i0 PRJNA896554 104017 322 1.236948 3.98297256 Dictyostelium discoideum 44689 Evosea other_Eukaryota 97.1 1.38e-15   NTclustered gi|66820157|ref|XM_638626.1| 352472 g96477 i0 77.987 1.21428571428571 159 31 49 4 65 221 211 55 Dictyostelium discoideum AX4 FKBP-type peptidylprolyl cis-trans isomerase (DDB_G0275227) mRNA, complete cds blastn 391 97.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
22547582 22547582 PRJNA896554_P_NODE_159638_length_247_cov_0.885057_g152098_i0 PRJNA896554 159638 247 0.885057 2.18609079 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.022   NTclustered gi|66821162|ref|XM_639000.1| 352472 g152098 i0 100 0.11336032388664 28 0 11 0 16 43 260 233 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0274877) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
22549166 22549166 PRJNA896554_P_NODE_83058_length_387_cov_0.980892_g75518_i0 PRJNA896554 83058 387 0.980892 3.79605204 Dictyostelium discoideum 44689 Evosea other_Eukaryota 161 5.889999999999998e-35   NTclustered gi|66802102|ref|XM_629843.1| 352472 g75518 i0 80.66 1.66925064599483 212 37 54 4 172 381 558 349 Dictyostelium discoideum AX4 proteasome subunit alpha type 2 (psmA2) mRNA, complete cds blastn 646 161 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
23822881 23822881 PRJNA896554_P_NODE_159779_length_247_cov_0.885057_g152239_i0 PRJNA896554 159779 247 0.885057 2.18609079 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.022   NTclustered gi|66810983|ref|XM_634107.1| 352472 g152239 i0 100 0.11336032388664 28 0 11 0 72 99 302 275 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0283177) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;