RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA893346" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA893346 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
868545 868545 PRJNA893346_P_NODE_4361_length_778_cov_1.943262_g3928_i0 PRJNA893346 4361 778 1.943262 15.11857836 Copromyxa protea 931554 Tubulinea other_Eukaryota 427 1.11e-114   NTclustered gi|508737347|dbj|AB766053.1| 931554 g3928 i0 79.8 0.769922879177378 599 111 76 10 166 759 1389 796 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 599 427 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
2518932 2518932 PRJNA893346_P_NODE_8262_length_553_cov_1.458333_g7781_i0 PRJNA893346 8262 553 1.458333 8.06458149 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 1022 0   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g7781 i0 100 41.2911392405063 553 0 100 0 1 553 588 36 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 22834 1022 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
3419097 3419097 PRJNA893346_P_NODE_33483_length_251_cov_0.865169_g32993_i0 PRJNA893346 33483 251 0.865169 2.17157419 Saccamoeba lacustris 704142 Tubulinea other_Eukaryota 237 5.85e-58   NTclustered gi|423292025|gb|JQ519458.1| 704142 g32993 i0 84.979 93.5099601593625 233 35 93 0 18 250 693 461 Saccamoeba lacustris clone JG10.115_b9 actin gene, partial cds blastn 23471 237 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba lacustris
3795148 3795148 PRJNA893346_P_NODE_25263_length_302_cov_2.004367_g24773_i0 PRJNA893346 25263 302 2.004367 6.05318834 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 71.3 7.76e-8   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g24773 i0 93.617 0.466887417218543 47 3 16 0 1 47 47 1 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 141 71.3 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
4696729 4696729 PRJNA893346_P_NODE_30204_length_270_cov_1.507614_g29714_i0 PRJNA893346 30204 270 1.507614 4.0705578 Copromyxa protea 931554 Tubulinea other_Eukaryota 241 4.92e-59   NTclustered gi|508737347|dbj|AB766053.1| 931554 g29714 i0 84.874 3.47037037037037 238 36 88 0 1 238 238 1 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 937 241 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
13997129 13997129 PRJNA893346_P_NODE_13851_length_419_cov_1.638728_g13364_i0 PRJNA893346 13851 419 1.638728 6.86627032 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 758 0   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g13364 i0 99.284 77.5489260143198 419 3 100 0 1 419 1292 874 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 32493 758 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
17446172 17446172 PRJNA893346_P_NODE_17794_length_367_cov_1.170068_g17305_i0 PRJNA893346 17794 367 1.170068 4.29414956 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 222 2.51e-53   NTclustered gi|300078497|gb|GU001159.1| 200886 g17305 i0 91.411 44.0299727520436 163 13 44 1 151 312 1280 1118 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16159 222 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
25094505 25094505 PRJNA893346_P_NODE_39760_length_241_cov_0.916667_g39270_i0 PRJNA893346 39760 241 0.916667 2.20916747 Glaeseria mira 242547 Tubulinea other_Eukaryota 311 3.24e-80   NTclustered gi|33946352|gb|AY294155.1| 242547 g39270 i0 90 99.850622406639 240 24 99 0 2 241 69 308 Glaeseria mira actin mRNA, partial cds blastn 24064 311 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Glaeseria Glaeseria mira

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;