RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA893346" and tax_phylum = "Lenarviricota"

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tax_superkingdom 1

tax_phylum 1

  • Lenarviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA893346 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3418722 3418722 PRJNA893346_P_NODE_183_length_2651_cov_23.615206_g144_i0 PRJNA893346 183 2651 23.615206 626.03911106 Phomopsis asparagi Magoulivirus 1 3082023 Viruses Viruses 4852 0   NTclustered gi|2594646863|gb|OR578827.1| 3082023 g144 i0 100 2.33911731422105 2627 0 99 0 1 2627 13 2639 Phomopsis asparagi Magoulivirus 1 isolate XJ5 RNA dependent RNA polymerase (RdRp) gene, complete cds blastn 6201 4852 1 Viruses   Orthornavirae Lenarviricota Miaviricetes Ourlivirales Botourmiaviridae Magoulivirus Phomopsis asparagi Magoulivirus 1
21270005 21270005 PRJNA893346_P_NODE_237_length_2476_cov_65.375780_g188_i0 PRJNA893346 237 2476 65.37578 1618.7043128 Plasmopara viticola lesion associated mitovirus 37 2719464 Viruses Viruses 1282 0   NTclustered gi|1826553941|gb|MN539798.1| 2719464 g188 i0 79.005 1.84854604200323 1929 366 77 37 2 1908 1 1912 Plasmopara viticola lesion associated mitovirus 37 isolate DMG-B_DN54221 RNA-dependent RNA polymerase gene, partial cds blastn 4577 1282 1 Viruses   Orthornavirae Lenarviricota Howeltoviricetes Cryppavirales Mitoviridae Mitovirus Plasmopara viticola lesion associated mitovirus 37
22544927 22544927 PRJNA893346_P_NODE_218_length_2555_cov_49.763497_g173_i0 PRJNA893346 218 2555 49.763497 1271.45734835 Diaporthe gulyae magoulivirus 1 3077424 Viruses Viruses 1345 0   NTclustered gi|2582775934|gb|OR224975.1| 3077424 g173 i0 78.398 2.1013698630137 2185 390 84 69 5 2149 6 2148 MAG: Diaporthe gulyae magoulivirus 1 isolate DgM4 genomic sequence blastn 5369 1345 1 Viruses   Orthornavirae Lenarviricota Miaviricetes Ourlivirales Botourmiaviridae Magoulivirus Diaporthe gulyae magoulivirus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;