RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA893346" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA893346 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17446490 17446490 PRJNA893346_P_NODE_30254_length_270_cov_1.172589_g29764_i0 PRJNA893346 30254 270 1.172589 3.1659903 Diadema antillarum 105358 Echinodermata other_Eukaryota 150 8.53e-32   NTclustered gi|2919445441|ref|XM_071639766.1| 105358 g29764 i0 81.026 6.05555555555556 195 32 71 5 7 198 1260 1452 PREDICTED: Diadema antillarum glutamate dehydrogenase, mitochondrial-like (LOC139728831), mRNA blastn 1635 150 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Diadematoida Diadematidae Diadema Diadema antillarum
24194787 24194787 PRJNA893346_P_NODE_28259_length_283_cov_0.933333_g27769_i0 PRJNA893346 28259 283 0.933333 2.64133239 root 1 Root_unresolved Root_unresolved 63.9 1.21e-5   NTclustered gi|1752351555|ref|XM_030981309.1| 7668 g27769 i0 93.023 12.4664310954064 43 3 15 0 57 99 108 150 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC115922370 (LOC115922370), mRNA blastn 3528 63.9 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
25094380 25094380 PRJNA893346_P_NODE_3380_length_888_cov_2.509202_g2991_i0 PRJNA893346 3380 888 2.509202 22.28171376 Asterias rubens 7604 Echinodermata other_Eukaryota 627 1.1699999999999998e-174   NTclustered gi|1834269499|ref|XM_033787209.1| 7604 g2991 i0 80.071 90.2004504504504 848 165 95 4 43 888 146 991 PREDICTED: Asterias rubens tubulin alpha chain, testis-specific (LOC117303114), transcript variant X2, mRNA blastn 80098 627 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;