RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA893346" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA893346 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9795833 9795833 PRJNA893346_P_NODE_16408_length_383_cov_0.990323_g15920_i0 PRJNA893346 16408 383 0.990323 3.79293709 Cryptosporidium ubiquitum 857276 SAR_Eukaryotes SAR_Eukaryotes 65.8 4.69e-6   NTclustered gi|1624737958|ref|XM_029018501.1| 857276 g15920 i0 90.196 39.242819843342 51 3 13 2 129 178 768 719 Cryptosporidium ubiquitum uncharacterized protein (cubi_01489), partial mRNA blastn 15030 65.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium ubiquitum
9796170 9796170 PRJNA893346_P_NODE_29488_length_275_cov_1.108911_g28998_i0 PRJNA893346 29488 275 1.108911 3.04950525 Theileria equi 5872 SAR_Eukaryotes SAR_Eukaryotes 80.5 1.16e-10   NTclustered gi|510907572|ref|XM_004831870.1| 1537102 g28998 i0 95.918 0.178181818181818 49 2 18 0 207 255 486 438 Theileria equi strain WA 60S ribosomal protein L19, putative (BEWA_049420), mRNA blastn 49 80.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria equi
12347530 12347530 PRJNA893346_P_NODE_39150_length_242_cov_0.911243_g38660_i0 PRJNA893346 39150 242 0.911243 2.20520806 Besnoitia besnoiti 94643 SAR_Eukaryotes SAR_Eukaryotes 147 9.72e-31   NTclustered gi|1673112363|ref|XM_029359405.1| 94643 g38660 i0 81.319 0.752066115702479 182 32 75 2 1 181 1308 1488 Besnoitia besnoiti DnaJ domain-containing protein (BESB_006500), partial mRNA blastn 182 147 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Besnoitia Besnoitia besnoiti
13622331 13622331 PRJNA893346_P_NODE_8051_length_561_cov_2.741803_g7572_i0 PRJNA893346 8051 561 2.741803 15.38151483 Toxoplasma gondii 5811 SAR_Eukaryotes SAR_Eukaryotes 63.9 2.55e-5   NTclustered gi|397561522|gb|JX044493.1| 5811 g7572 i0 81.707 0.996434937611408 82 10 14 5 482 561 149 227 Toxoplasma gondii strain GUYDOS chromosome Ia region 5 genomic sequence blastn 559 63.9 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;