RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA893346" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA893346 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5971275 5971275 PRJNA893346_P_NODE_20185_length_343_cov_1.140741_g19696_i0 PRJNA893346 20185 343 1.140741 3.91274163 Gammaretrovirus gibleu 3428953 Viruses Viruses 628 1.1799999999999997e-175   NTclustered gi|971888245|gb|KT724047.1| 11840 g19696 i0 99.708 94.33527696793 343 1 100 0 1 343 5091 5433 Gibbon ape leukemia virus strain San Francisco, complete genome blastn 32357 628 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus gibleu
8520734 8520734 PRJNA893346_P_NODE_13747_length_421_cov_1.186782_g13261_i0 PRJNA893346 13747 421 1.186782 4.99635222 Gammaretrovirus gibleu 3428953 Viruses Viruses 773 0   NTclustered gi|971888245|gb|KT724047.1| 11840 g13261 i0 99.762 34.2826603325416 421 1 100 0 1 421 7852 7432 Gibbon ape leukemia virus strain San Francisco, complete genome blastn 14433 773 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus gibleu
19994725 19994725 PRJNA893346_P_NODE_21476_length_332_cov_1.150579_g20987_i0 PRJNA893346 21476 332 1.150579 3.81992228 Gammaretrovirus gibleu 3428953 Viruses Viruses 614 3.1799999999999995e-171   NTclustered gi|971888245|gb|KT724047.1| 11840 g20987 i0 100 16.5572289156627 332 0 100 0 1 332 7092 7423 Gibbon ape leukemia virus strain San Francisco, complete genome blastn 5497 614 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus gibleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;