RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA893346" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA893346 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5071356 5071356 PRJNA893346_P_NODE_35304_length_248_cov_0.880000_g34814_i0 PRJNA893346 35304 248 0.88 2.1824 Cetobacterium 180162 Bacteria Bacteria 453 5.2600000000000005e-123   NTclustered gi|2666488225|gb|CP143319.1| 188913 g34814 i0 99.597 4.13306451612903 248 1 100 0 1 248 488804 489051 Cetobacterium somerae strain ceto chromosome, complete genome blastn 1025 453 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
6347290 6347290 PRJNA893346_P_NODE_25505_length_301_cov_0.964912_g25015_i0 PRJNA893346 25505 301 0.964912 2.90438512 Cetobacterium 180162 Bacteria Bacteria 403 6.71e-108   NTclustered gi|2666488225|gb|CP143319.1| 188913 g25015 i0 91.03 8.48172757475083 301 24 100 2 1 301 1956024 1955727 Cetobacterium somerae strain ceto chromosome, complete genome blastn 2553 403 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
12347412 12347412 PRJNA893346_P_NODE_33650_length_251_cov_0.865169_g33160_i0 PRJNA893346 33650 251 0.865169 2.17157419 Cetobacterium somerae 188913 Bacteria Bacteria 193 1.28e-44   NTclustered gi|2201062197|gb|CP092519.1| 188913 g33160 i0 80.972 4.94422310756972 247 43 98 4 7 251 1723428 1723184 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 1241 193 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
24194768 24194768 PRJNA893346_P_NODE_18419_length_360_cov_1.341463_g17930_i0 PRJNA893346 18419 360 1.341463 4.8292668 Cetobacterium 180162 Bacteria Bacteria 525 1.6699999999999996e-144   NTclustered gi|2666488225|gb|CP143319.1| 188913 g17930 i0 93.036 4.98611111111111 359 25 99 0 1 359 1955673 1955315 Cetobacterium somerae strain ceto chromosome, complete genome blastn 1795 525 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;