RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA893346" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 5 ✖

bioproject 1

  • PRJNA893346 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7621291 7621291 PRJNA893346_P_NODE_23266_length_317_cov_1.709016_g22776_i0 PRJNA893346 23266 317 1.709016 5.41758072 Eukaryota 2759 Plants Plants 52.8 0.03   NTclustered gi|2082262783|ref|XM_043069077.1| 3055 g22776 i0 100 0.176656151419558 28 0 9 0 15 42 1483 1456 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g555378v5), mRNA blastn 56 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
8521142 8521142 PRJNA893346_P_NODE_30947_length_265_cov_1.604167_g30457_i0 PRJNA893346 30947 265 1.604167 4.25104255 Coccomyxa subellipsoidea 248742 Plants Plants 313 1.01e-80   NTclustered gi|545367524|ref|XM_005648521.1| 574566 g30457 i0 92.273 1.66037735849057 220 17 83 0 1 220 285 66 Coccomyxa subellipsoidea C-169 chloroplast ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit mRNA blastn 440 313 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
13622008 13622008 PRJNA893346_P_NODE_30231_length_270_cov_1.192893_g29741_i0 PRJNA893346 30231 270 1.192893 3.2208111 Tetradesmus obliquus 3088 Plants Plants 303 6.19e-78   NTclustered gi|87313204|gb|DQ370087.1| 3088 g29741 i0 92.453 37.2296296296296 212 16 79 0 59 270 40 251 Scenedesmus obliquus light-harvesting chlorophyll-a/b binding protein LhcbM2 mRNA, complete cds blastn 10052 303 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
21269994 21269994 PRJNA893346_P_NODE_23297_length_317_cov_1.262295_g22807_i0 PRJNA893346 23297 317 1.262295 4.00147515 Chlamydomonas reinhardtii 3055 Plants Plants 52.8 0.03   NTclustered gi|2082242151|ref|XM_043060786.1| 3055 g22807 i0 100 0.0883280757097792 28 0 9 0 215 242 3255 3228 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_03g165750v5), mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
23820152 23820152 PRJNA893346_P_NODE_17799_length_367_cov_1.047619_g17310_i0 PRJNA893346 17799 367 1.047619 3.84476173 Chlamydomonas reinhardtii 3055 Plants Plants 244 5.36e-60   NTclustered gi|18177|emb|X66410.1| 3055 g17310 i0 82.131 29.2234332425068 291 46 78 6 36 323 59 346 C.reinhardtii mRNA for pyruvate formate-lyase blastn 10725 244 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;