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contig_metadata

20 rows where analysis = "blastn", bioproject = "PRJNA893346" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 20 ✖

bioproject 1

  • PRJNA893346 · 20 ✖

analysis 1

  • blastn · 20 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
867849 867849 PRJNA893346_P_NODE_12301_length_446_cov_2.664879_g11816_i0 PRJNA893346 12301 446 2.664879 11.88536034 Dictyostelium discoideum 44689 Evosea other_Eukaryota 217 1.45e-51   NTclustered gi|66818310|ref|XM_637723.1| 352472 g11816 i0 83.55 61.5269058295964 231 38 52 0 13 243 1 231 Dictyostelium discoideum AX4 ubiquitin/ribosomal protein S27a fusion protein (ubqC) mRNA, complete cds blastn 27441 217 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
868545 868545 PRJNA893346_P_NODE_4361_length_778_cov_1.943262_g3928_i0 PRJNA893346 4361 778 1.943262 15.11857836 Copromyxa protea 931554 Tubulinea other_Eukaryota 427 1.11e-114   NTclustered gi|508737347|dbj|AB766053.1| 931554 g3928 i0 79.8 0.769922879177378 599 111 76 10 166 759 1389 796 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 599 427 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
2518932 2518932 PRJNA893346_P_NODE_8262_length_553_cov_1.458333_g7781_i0 PRJNA893346 8262 553 1.458333 8.06458149 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 1022 0   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g7781 i0 100 41.2911392405063 553 0 100 0 1 553 588 36 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 22834 1022 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
3419097 3419097 PRJNA893346_P_NODE_33483_length_251_cov_0.865169_g32993_i0 PRJNA893346 33483 251 0.865169 2.17157419 Saccamoeba lacustris 704142 Tubulinea other_Eukaryota 237 5.85e-58   NTclustered gi|423292025|gb|JQ519458.1| 704142 g32993 i0 84.979 93.5099601593625 233 35 93 0 18 250 693 461 Saccamoeba lacustris clone JG10.115_b9 actin gene, partial cds blastn 23471 237 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba lacustris
3795148 3795148 PRJNA893346_P_NODE_25263_length_302_cov_2.004367_g24773_i0 PRJNA893346 25263 302 2.004367 6.05318834 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 71.3 7.76e-8   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g24773 i0 93.617 0.466887417218543 47 3 16 0 1 47 47 1 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 141 71.3 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
4696729 4696729 PRJNA893346_P_NODE_30204_length_270_cov_1.507614_g29714_i0 PRJNA893346 30204 270 1.507614 4.0705578 Copromyxa protea 931554 Tubulinea other_Eukaryota 241 4.92e-59   NTclustered gi|508737347|dbj|AB766053.1| 931554 g29714 i0 84.874 3.47037037037037 238 36 88 0 1 238 238 1 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 937 241 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
7246091 7246091 PRJNA893346_P_NODE_1806_length_1207_cov_2.091711_g1538_i0 PRJNA893346 1806 1207 2.091711 25.24695177 Dictyostelium discoideum 44689 Evosea other_Eukaryota 933 0   NTclustered gi|66821574|ref|XM_639154.1| 352472 g1538 i0 81.875 93.0124275062138 1120 191 92 11 33 1146 1131 18 Dictyostelium discoideum AX4 hypothetical protein (act2) mRNA, complete cds blastn 112266 933 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
8520703 8520703 PRJNA893346_P_NODE_12607_length_440_cov_1.891008_g12121_i0 PRJNA893346 12607 440 1.891008 8.3204352 Platyamoeba placida 3454475 Discosea other_Eukaryota 758 0   NTclustered gi|33946348|gb|AY294153.1| 197527 g12121 i0 97.727 99.2318181818182 440 10 100 0 1 440 660 1099 Platyamoeba placida actin mRNA, partial cds blastn 43662 758 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida
8520973 8520973 PRJNA893346_P_NODE_22887_length_320_cov_2.246964_g22397_i0 PRJNA893346 22887 320 2.246964 7.1902848 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 518 2.46e-142   NTclustered gi|221185864|gb|FJ577811.1| 590481 g22397 i0 99.303 62.378125 287 1 89 1 1 286 743 1029 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 19961 518 1 Eukaryota Amoebozoa             uncultured Amoebozoa
13621631 13621631 PRJNA893346_P_NODE_16551_length_381_cov_1.487013_g16063_i0 PRJNA893346 16551 381 1.487013 5.66551953 Paramoeba perurans 437603 Discosea other_Eukaryota 183 1.23e-41   NTclustered gi|2048770418|gb|MW534133.1| 437603 g16063 i0 80.247 14.2073490813648 243 48 64 0 111 353 324 82 Paramoeba perurans isolate PPER_00013024 hypothetical protein mRNA, complete cds blastn 5413 183 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
13621864 13621864 PRJNA893346_P_NODE_25071_length_304_cov_1.000000_g24581_i0 PRJNA893346 25071 304 1 3.04 Entamoeba histolytica 5759 Evosea other_Eukaryota 250 9.36e-62   NTclustered gi|183234457|ref|XM_645739.2| 294381 g24581 i0 85.417 71.1940789473684 240 35 79 0 6 245 2 241 Entamoeba histolytica HM-1:IMSS Rho family GTPase (EHI_197840), mRNA blastn 21643 250 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
13997129 13997129 PRJNA893346_P_NODE_13851_length_419_cov_1.638728_g13364_i0 PRJNA893346 13851 419 1.638728 6.86627032 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 758 0   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g13364 i0 99.284 77.5489260143198 419 3 100 0 1 419 1292 874 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 32493 758 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
14896475 14896475 PRJNA893346_P_NODE_39392_length_241_cov_3.642857_g38902_i0 PRJNA893346 39392 241 3.642857 8.77928537 Acytostelium subglobosum 361139 Evosea other_Eukaryota 156 1.6100000000000002e-33   NTclustered gi|831768583|ref|XM_012896994.1| 1410327 g38902 i0 83.929 38.7136929460581 168 21 68 5 61 225 69 233 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 9330 156 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
17446172 17446172 PRJNA893346_P_NODE_17794_length_367_cov_1.170068_g17305_i0 PRJNA893346 17794 367 1.170068 4.29414956 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 222 2.51e-53   NTclustered gi|300078497|gb|GU001159.1| 200886 g17305 i0 91.411 44.0299727520436 163 13 44 1 151 312 1280 1118 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16159 222 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
17446441 17446441 PRJNA893346_P_NODE_28214_length_283_cov_1.100000_g27724_i0 PRJNA893346 28214 283 1.1 3.113 Dictyostelium discoideum 44689 Evosea other_Eukaryota 154 6.96e-33   NTclustered gi|66817211|ref|XM_637392.1| 352472 g27724 i0 88.889 11.4452296819788 126 13 44 1 1 125 309 184 Dictyostelium discoideum AX4 60S ribosomal protein L4 (rpl4) mRNA, complete cds blastn 3239 154 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
17820811 17820811 PRJNA893346_P_NODE_34214_length_250_cov_0.870056_g33724_i0 PRJNA893346 34214 250 0.870056 2.17514 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 62.1 3.76e-5   NTclustered gi|330844455|ref|XM_003294093.1| 5786 g33724 i0 100 4.852 33 0 13 0 86 118 160 192 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_42973), partial mRNA blastn 1213 62.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
18719915 18719915 PRJNA893346_P_NODE_36915_length_245_cov_1.430233_g36425_i0 PRJNA893346 36915 245 1.430233 3.50407085 Entamoeba dispar 46681 Evosea other_Eukaryota 185 2.09e-42   NTclustered gi|167389651|ref|XM_001738981.1| 370354 g36425 i0 80.738 73.8285714285714 244 41 98 6 3 243 610 370 Entamoeba dispar SAW760 heat shock 70 kDa protein, putative (EDI_175820), partial mRNA blastn 18088 185 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba dispar
19994700 19994700 PRJNA893346_P_NODE_20716_length_339_cov_0.954887_g20227_i0 PRJNA893346 20716 339 0.954887 3.23706693 Heterostelium album 2086695 Evosea other_Eukaryota 392 1.66e-104   NTclustered gi|1160555578|ref|XM_020573614.1| 670386 g20227 i0 88.58 94.2212389380531 324 35 95 2 5 327 772 1094 Polysphondylium pallidum PN500 actin partial mRNA blastn 31941 392 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
25093842 25093842 PRJNA893346_P_NODE_12780_length_437_cov_1.480769_g12294_i0 PRJNA893346 12780 437 1.480769 6.47096053 Dictyostelium discoideum 44689 Evosea other_Eukaryota 58.4 0.001   NTclustered gi|66821416|ref|XM_639098.1| 352472 g12294 i0 92.683 0.189931350114416 41 2 9 1 392 431 819 859 Dictyostelium discoideum AX4 PA14 domain-containing protein (psiL) mRNA, complete cds blastn 83 58.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
25094505 25094505 PRJNA893346_P_NODE_39760_length_241_cov_0.916667_g39270_i0 PRJNA893346 39760 241 0.916667 2.20916747 Glaeseria mira 242547 Tubulinea other_Eukaryota 311 3.24e-80   NTclustered gi|33946352|gb|AY294155.1| 242547 g39270 i0 90 99.850622406639 240 24 99 0 2 241 69 308 Glaeseria mira actin mRNA, partial cds blastn 24064 311 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Glaeseria Glaeseria mira

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;