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contig_metadata

25 rows where analysis = "blastn", bioproject = "PRJNA891846" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 25 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA891846 · 25 ✖

analysis 1

  • blastn · 25 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4696045 4696045 PRJNA891846_P_NODE_644_length_1512_cov_2.022238_g575_i0 PRJNA891846 644 1512 2.022238 30.57623856 Trichinella spiralis 6334 Nematoda Nematoda 785 0   NTclustered gi|339254111|ref|XM_003372231.1| 6334 g575 i0 77.106 71.8690476190476 1389 298 91 17 2 1380 1379 1 Trichinella spiralis moesin/ezrin/radixin protein (Tsp_10541) mRNA, complete cds blastn 108666 785 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
5970066 5970066 PRJNA891846_P_NODE_17765_length_361_cov_0.934028_g17546_i0 PRJNA891846 17765 361 0.934028 3.37184108 Xiphinema brevicolle 243734 Nematoda Nematoda 311 5.11e-80   NTclustered gi|406362781|dbj|AB675673.1| 243734 g17546 i0 82.808 58.5013850415512 349 58 96 2 7 354 673 326 Xiphinema brevicolle mitochondrial COI gene for cytochrome oxidase subunit I, partial cds, DNA Extraction No. 149 blastn 21119 311 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Longidoridae Xiphinema Xiphinema brevicolle
5970215 5970215 PRJNA891846_P_NODE_2385_length_902_cov_21.697226_g2224_i0 PRJNA891846 2385 902 21.697226 195.70897852 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 1655 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g2224 i0 99.889 51.1607538802661 899 1 99 0 4 902 3277 2379 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 46147 1655 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
7244869 7244869 PRJNA891846_P_NODE_14666_length_395_cov_3.850932_g14447_i0 PRJNA891846 14666 395 3.850932 15.2111814 Pearsonema plica 2025202 Nematoda Nematoda 235 3.5e-57   NTclustered gi|585724675|gb|KF836607.1| 2025202 g14447 i0 93.168 17.5443037974684 161 10 41 1 1 160 2006 2166 Capillaria plica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6930 235 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pearsonema Pearsonema plica
7245509 7245509 PRJNA891846_P_NODE_40466_length_247_cov_1.729885_g40246_i0 PRJNA891846 40466 247 1.729885 4.27281595 Trichinella spiralis 6334 Nematoda Nematoda 176 1.27e-39   NTclustered gi|339259677|ref|XM_003368738.1| 6334 g40246 i0 80.258 13.2793522267206 233 46 94 0 5 237 381 149 Trichinella spiralis sodium/potassium-transporting ATPase subunit alpha (Tsp_14317) mRNA, partial cds blastn 3280 176 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
7245768 7245768 PRJNA891846_P_NODE_8246_length_514_cov_1.868481_g8031_i0 PRJNA891846 8246 514 1.868481 9.60399234 Trichinella spiralis 6334 Nematoda Nematoda 209 2.82e-49   NTclustered gi|339246888|ref|XM_003375030.1| 6334 g8031 i0 80.989 2.88132295719844 263 50 51 0 249 511 55 317 Trichinella spiralis putative LIM domain protein (Tsp_04264) mRNA, complete cds blastn 1481 209 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
9794745 9794745 PRJNA891846_P_NODE_18968_length_349_cov_12.054348_g18749_i0 PRJNA891846 18968 349 12.054348 42.06967452 Aonchotheca paranalis 2025203 Nematoda Nematoda 470 7.68e-128   NTclustered gi|1279640587|gb|MF621021.1| 2025203 g18749 i0 91.066 31.8767908309456 347 31 99 0 3 349 3552 3898 Aonchotheca paranalis isolate PL 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11125 470 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Aonchotheca Aonchotheca paranalis
9795488 9795488 PRJNA891846_P_NODE_6108_length_588_cov_4.464078_g5898_i0 PRJNA891846 6108 588 4.464078 26.24877864 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 1081 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g5898 i0 99.83 1.98639455782313 588 1 100 0 1 588 8550 7963 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 1168 1081 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
10171706 10171706 PRJNA891846_P_NODE_4428_length_684_cov_3.235679_g4230_i0 PRJNA891846 4428 684 3.235679 22.13204436 Trichinella 6333 Nematoda Nematoda 420 1.6199999999999999e-112   NTclustered gi|339254855|ref|XM_003372603.1| 6334 g4230 i0 81.984 4.30847953216374 494 89 72 0 189 682 1 494 Trichinella spiralis tropomyosin (Tsp_11392) mRNA, complete cds blastn 2947 420 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
11070806 11070806 PRJNA891846_P_NODE_35629_length_254_cov_2.436464_g35409_i0 PRJNA891846 35629 254 2.436464 6.18861856 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 464 2.4999999999999994e-126   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g35409 i0 99.606 11.4566929133858 254 1 100 0 1 254 12453 12706 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 2910 464 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
11071148 11071148 PRJNA891846_P_NODE_669_length_1492_cov_26.472163_g597_i0 PRJNA891846 669 1492 26.472163 394.96467196 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 2706 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g597 i0 99.397 54.5630026809651 1492 9 100 0 1 1492 5645 7136 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 81408 2706 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
12345813 12345813 PRJNA891846_P_NODE_1610_length_1068_cov_5.280402_g1484_i0 PRJNA891846 1610 1068 5.280402 56.39469336 Capillaria sp. ALS-2019 2651741 Nematoda Nematoda 285 9.83e-72   NTclustered gi|1811126246|gb|MN526255.1| 2651741 g1484 i0 99.363 24.2144194756554 157 1 85 0 1 157 1200 1044 Capillaria sp. ALS-2019 large subunit ribosomal RNA gene, partial sequence blastn 25861 285 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Capillaria Capillaria sp. ALS-2019
14895261 14895261 PRJNA891846_P_NODE_35852_length_253_cov_2.138889_g35632_i0 PRJNA891846 35852 253 2.138889 5.41138917 Trichinella spiralis 6334 Nematoda Nematoda 254 5.86e-63   NTclustered gi|339246888|ref|XM_003375030.1| 6334 g35632 i0 87.963 0.853754940711462 216 25 85 1 39 253 897 682 Trichinella spiralis putative LIM domain protein (Tsp_04264) mRNA, complete cds blastn 216 254 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
16169972 16169972 PRJNA891846_P_NODE_3613_length_752_cov_2.365243_g3424_i0 PRJNA891846 3613 752 2.365243 17.78662736 Trichinella spiralis 6334 Nematoda Nematoda 200 2.54e-46   NTclustered gi|339243348|ref|XM_003377552.1| 6334 g3424 i0 73.814 24.1077127659574 485 116 63 11 1 477 760 279 Trichinella spiralis 6-phosphofructokinase (Tsp_01783) mRNA, complete cds blastn 18129 200 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
16170303 16170303 PRJNA891846_P_NODE_7193_length_545_cov_8.269068_g6979_i0 PRJNA891846 7193 545 8.269068 45.0664206 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 974 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g6979 i0 98.899 1.57064220183486 545 6 100 0 1 545 7747 7203 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 856 974 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
18719026 18719026 PRJNA891846_P_NODE_5675_length_611_cov_15.730483_g5465_i0 PRJNA891846 5675 611 15.730483 96.11325113 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 1107 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g5465 i0 99.345 2.2847790507365 611 4 100 0 1 611 7203 7813 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 1396 1107 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
22544032 22544032 PRJNA891846_P_NODE_33758_length_263_cov_1.221053_g33538_i0 PRJNA891846 33758 263 1.221053 3.21136939 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 479 9.29e-131   NTclustered gi|1070586637|gb|KU987805.1| 1904821 g33538 i0 99.62 98.7110266159696 263 0 100 1 1 263 864 603 Pseudocapillaria tomentosa 18S ribosomal RNA gene, partial sequence blastn 25961 479 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
23819007 23819007 PRJNA891846_P_NODE_19439_length_345_cov_2.018382_g19220_i0 PRJNA891846 19439 345 2.018382 6.9634179 Pearsonema plica 2025202 Nematoda Nematoda 95.3 5.35e-15   NTclustered gi|585724675|gb|KF836607.1| 2025202 g19220 i0 93.75 15.336231884058 64 3 19 1 1 64 3099 3037 Capillaria plica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5291 95.3 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pearsonema Pearsonema plica
23819008 23819008 PRJNA891846_P_NODE_19479_length_345_cov_1.389706_g19260_i0 PRJNA891846 19479 345 1.389706 4.7944857 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 632 9.17e-177   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g19260 i0 99.71 1 345 1 100 0 1 345 13102 12758 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 345 632 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
23819011 23819011 PRJNA891846_P_NODE_19679_length_343_cov_3.066667_g19460_i0 PRJNA891846 19679 343 3.066667 10.51866781 Trichinella spiralis 6334 Nematoda Nematoda 139 2.42e-28   NTclustered gi|339235336|ref|XM_003379175.1| 6334 g19460 i0 82.692 14.9387755102041 156 27 45 0 186 341 65 220 Trichinella spiralis ubiquitin-conjugating enzyme E2-21 protein (Tsp_02891) mRNA, complete cds blastn 5124 139 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
23819157 23819157 PRJNA891846_P_NODE_2599_length_869_cov_1.562814_g2432_i0 PRJNA891846 2599 869 1.562814 13.58085366 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 1537 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g2432 i0 98.618 20.7295742232451 868 12 99 0 1 868 482 1349 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 18014 1537 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
23819740 23819740 PRJNA891846_P_NODE_539_length_1601_cov_3.653141_g476_i0 PRJNA891846 539 1601 3.653141 58.48678741 Trichinella spiralis 6334 Nematoda Nematoda 797 0   NTclustered gi|339247610|ref|XM_003375391.1| 6334 g476 i0 75.828 1.02810743285447 1601 364 99 14 8 1600 4313 2728 Trichinella spiralis putative myosin head (Tsp_08431) mRNA, complete cds blastn 1646 797 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
23819779 23819779 PRJNA891846_P_NODE_6759_length_561_cov_3.807377_g6547_i0 PRJNA891846 6759 561 3.807377 21.35938497 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 977 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g6547 i0 98.05 5.86096256684492 564 8 100 1 1 561 4873 4310 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 3288 977 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
25092665 25092665 PRJNA891846_P_NODE_11260_length_447_cov_3.933155_g11043_i0 PRJNA891846 11260 447 3.933155 17.58120285 Trichinella spiralis 6334 Nematoda Nematoda 150 1.4899999999999998e-31   NTclustered gi|1938390596|gb|MW302146.1| 6334 g11043 i0 90.351 23.7404921700224 114 11 26 0 1 114 6352 6239 Trichinella spiralis isolate Europe-Poland-22D20-B small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10612 150 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
25092940 25092940 PRJNA891846_P_NODE_22400_length_322_cov_1.714859_g22181_i0 PRJNA891846 22400 322 1.714859 5.52184598 Trichinella spiralis 6334 Nematoda Nematoda 230 1.3e-55   NTclustered gi|339249266|ref|XM_003373573.1| 6334 g22181 i0 80.263 2.22360248447205 304 60 94 0 7 310 304 1 Trichinella spiralis zinc finger protein (Tsp_08212) mRNA, complete cds blastn 716 230 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;