RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA891846" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 4 ✖

bioproject 1

  • PRJNA891846 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2142530 2142530 PRJNA891846_P_NODE_2_length_7796_cov_18.942898_g1_i0 PRJNA891846 2 7796 18.942898 1476.78832808 Alpharetrovirus avileu 3426267 Viruses Viruses 11417 0   NTclustered gi|1878848963|gb|MN956379.1| 11864 g1 i0 94.495 98.6702154951257 7430 367 95 20 321 7718 217 7636 Avian leukosis virus isolate PK19FA01, complete genome blastn 769233 11417 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus avileu
9795559 9795559 PRJNA891846_P_NODE_8_length_6159_cov_20.153467_g1_i1 PRJNA891846 8 6159 20.153467 1241.25203253 Alpharetrovirus avileu 3426267 Viruses Viruses 9568 0   NTclustered gi|2654355852|gb|OR670975.1| 11864 g1 i1 95.026 101.176002597824 6112 267 99 17 1 6081 1564 7669 Avian leukosis virus strain CH/JXTH2204, complete genome blastn 623143 9568 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus avileu
19993408 19993408 PRJNA891846_P_NODE_16_length_4993_cov_20.869715_g1_i2 PRJNA891846 16 4993 20.869715 1042.02486995 Alpharetrovirus avileu 3426267 Viruses Viruses 7830 0   NTclustered gi|2654355852|gb|OR670975.1| 11864 g1 i2 95.37 101.387342279191 4946 192 98 17 1 4915 2730 7669 Avian leukosis virus strain CH/JXTH2204, complete genome blastn 506227 7830 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus avileu
23819726 23819726 PRJNA891846_P_NODE_48139_length_191_cov_1.753788_g47919_i0 PRJNA891846 48139 191 1.753788 3.34973508 Alpharetrovirus avileu 3426267 Viruses Viruses 339 1.13e-88   NTclustered gi|2508191771|gb|OP918846.1| 11946 g47919 i0 100 95.7905759162304 183 0 96 0 9 191 6683 6865 Avian leukemia virus isolate LY2021J, partial genome blastn 18296 339 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus avileu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;