RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA890871" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA890871 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4693387 4693387 PRJNA890871_P_NODE_6524_length_592_cov_2.452794_g6389_i0 PRJNA890871 6524 592 2.452794 14.52054048 Turneriella parva 29510 Bacteria Bacteria 89.8 4.46e-13   NTclustered gi|390609540|gb|CP002959.1| 869212 g6389 i0 93.443 2.34966216216216 61 2 10 2 491 549 3860064 3860004 Turneriella parva DSM 21527, complete genome blastn 1391 89.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Turneriella Turneriella parva
11446434 11446434 PRJNA890871_P_NODE_68209_length_249_cov_0.875000_g68074_i0 PRJNA890871 68209 249 0.875 2.17875 Treponema 157 Bacteria Bacteria 117 7.88e-22   NTclustered gi|1807378492|gb|CP048020.1| 69710 g68074 i0 86.667 3.4136546184739 105 14 42 0 145 249 179635 179531 Treponema vincentii strain OMZ 804 chromosome, complete genome blastn 850 117 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
17443261 17443261 PRJNA890871_P_NODE_70074_length_248_cov_0.880000_g69939_i0 PRJNA890871 70074 248 0.88 2.1824 Leptospira cinconiae 3235173 Bacteria Bacteria 353 5.49e-93   NTclustered gi|2777192084|gb|CP162137.1| 3235173 g69939 i0 92.339 1 248 19 100 0 1 248 2365374 2365127 Leptospira cinconiae strain WS58.C1 chromosome 1, complete sequence blastn 248 353 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira cinconiae
25091055 25091055 PRJNA890871_P_NODE_67740_length_249_cov_0.875000_g67605_i0 PRJNA890871 67740 249 0.875 2.17875 Leptospira cinconiae 3235173 Bacteria Bacteria 305 1.57e-78   NTclustered gi|2777192084|gb|CP162137.1| 3235173 g67605 i0 88.755 1 249 28 100 0 1 249 65357 65605 Leptospira cinconiae strain WS58.C1 chromosome 1, complete sequence blastn 249 305 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira cinconiae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;