RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA890871" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA890871 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12344222 12344222 PRJNA890871_P_NODE_7690_length_548_cov_2.187368_g7555_i0 PRJNA890871 7690 548 2.187368 11.98677664 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 115 6.78e-21   NTclustered gi|325194231|emb|FR825088.1| 890382 g7555 i0 79.429 0.401459854014599 175 26 31 7 328 499 804 637 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 220 115 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
16167363 16167363 PRJNA890871_P_NODE_50153_length_266_cov_2.176166_g50018_i0 PRJNA890871 50153 266 2.176166 5.78860156 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 387 5.87e-103   NTclustered gi|325194231|emb|FR825088.1| 890382 g50018 i0 95.102 1.72932330827068 245 12 92 0 1 245 1246 1490 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 460 387 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;