RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA890871" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA890871 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3415777 3415777 PRJNA890871_P_NODE_69603_length_248_cov_0.880000_g69468_i0 PRJNA890871 69603 248 0.88 2.1824 Myxococcus sp. MH1 2982796 Bacteria Bacteria 448 2.4499999999999996e-121   NTclustered gi|2321229309|dbj|AP026947.1| 2982796 g69468 i0 99.194 9.01612903225806 248 2 100 0 1 248 2007542 2007295 Myxococcus sp. MH1 DNA, complete genome blastn 2236 448 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus sp. MH1
11067147 11067147 PRJNA890871_P_NODE_13129_length_434_cov_2.404432_g12994_i0 PRJNA890871 13129 434 2.404432 10.43523488 Minicystis rosea 888845 Bacteria Bacteria 56.5 0.003   NTclustered gi|1127353251|gb|CP016211.1| 888845 g12994 i0 89.362 0.108294930875576 47 2 11 3 10 56 8188742 8188785 Minicystis rosea strain DSM 24000 chromosome, complete genome blastn 47 56.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
12343159 12343159 PRJNA890871_P_NODE_26130_length_328_cov_1.780392_g25995_i0 PRJNA890871 26130 328 1.780392 5.83968576 Sorangium cellulosum 56 Bacteria Bacteria 213 1.34e-50   NTclustered gi|1566495190|gb|CP012670.1| 56 g25995 i0 79.245 3.72560975609756 318 57 96 9 7 321 8092981 8092670 Sorangium cellulosum strain So ceGT47 chromosome, complete genome blastn 1222 213 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
12344480 12344480 PRJNA890871_P_NODE_90670_length_230_cov_3.770701_g90535_i0 PRJNA890871 90670 230 3.770701 8.6726123 Myxococcus fulvus 33 Bacteria Bacteria 355 1.4e-93   NTclustered gi|817709775|gb|CP006003.1| 1334629 g90535 i0 94.737 0.991304347826087 228 12 99 0 1 228 8644336 8644109 Myxococcus fulvus 124B02, complete genome blastn 228 355 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus fulvus
18716344 18716344 PRJNA890871_P_NODE_65535_length_250_cov_0.870056_g65400_i0 PRJNA890871 65535 250 0.870056 2.17514 Archangium violaceum 83451 Bacteria Bacteria 209 1.27e-49   NTclustered gi|2579675135|gb|CP043493.1| 83451 g65400 i0 82.787 48.692 244 32 96 8 1 239 3185382 3185620 Archangium violaceum strain Cbvi 34 chromosome, complete genome blastn 12173 209 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum
19990542 19990542 PRJNA890871_P_NODE_21836_length_352_cov_2.645161_g21701_i0 PRJNA890871 21836 352 2.645161 9.31096672 Stigmatella aurantiaca 41 Bacteria Bacteria 113 1.5e-20   NTclustered gi|309390350|gb|CP002271.1| 378806 g21701 i0 84.348 12.1960227272727 115 18 33 0 3 117 19328 19214 Stigmatella aurantiaca DW4/3-1, complete genome blastn 4293 113 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca
19991444 19991444 PRJNA890871_P_NODE_57876_length_256_cov_2.125683_g57741_i0 PRJNA890871 57876 256 2.125683 5.44174848 Archangium violaceum 83451 Bacteria Bacteria 226 1.3e-54   NTclustered gi|1985695619|gb|CP069396.1| 83451 g57741 i0 87 74.13671875 200 26 78 0 57 256 5433486 5433287 Archangium violaceum strain SDU8 chromosome, complete genome blastn 18979 226 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;