RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA890871" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA890871 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3415787 3415787 PRJNA890871_P_NODE_70383_length_248_cov_0.880000_g70248_i0 PRJNA890871 70383 248 0.88 2.1824 Mycoplasma yeatsii 51365 Bacteria Bacteria 398 2.5e-106   NTclustered gi|756767228|gb|CP007520.1| 743967 g70248 i0 95.565 2 248 11 100 0 1 248 165763 165516 Mycoplasma yeatsii GM274B blastn 496 398 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma yeatsii
12721870 12721870 PRJNA890871_P_NODE_23850_length_340_cov_2.176030_g23715_i0 PRJNA890871 23850 340 2.17603 7.398502 Mesomycoplasma 2923352 Bacteria Bacteria 612 1.17e-170   NTclustered gi|1720621726|gb|CP035041.1| 2100 g23715 i0 99.118 384.9 340 3 100 0 1 340 599775 599436 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 130866 612 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
21265613 21265613 PRJNA890871_P_NODE_1377_length_1737_cov_3.849159_g1287_i0 PRJNA890871 1377 1737 3.849159 66.85989183 Mycoplasma mycoides 2102 Bacteria Bacteria 58.4 0.004   NTclustered gi|2040364209|gb|CP065574.1| 40477 g1287 i0 89.362 0.0270581462291307 47 3 3 2 1524 1570 697310 697266 Mycoplasma mycoides subsp. capri strain Wi8079 chromosome, complete genome blastn 47 58.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides
21644811 21644811 PRJNA890871_P_NODE_65377_length_250_cov_0.870056_g65242_i0 PRJNA890871 65377 250 0.870056 2.17514 Mesomycoplasma 2923352 Bacteria Bacteria 462 8.83e-126   NTclustered gi|1720621726|gb|CP035041.1| 2100 g65242 i0 100 16 250 0 100 0 1 250 390251 390002 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 4000 462 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;