RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA890871" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA890871 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
865112 865112 PRJNA890871_P_NODE_71501_length_247_cov_1.574713_g71366_i0 PRJNA890871 71501 247 1.574713 3.88954111 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 69.4 2.22e-7   NTclustered gi|575456455|gb|CP007128.1| 861299 g71366 i0 81.928 0.336032388663968 83 13 33 2 7 88 2458717 2458798 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 83 69.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
2140474 2140474 PRJNA890871_P_NODE_70162_length_248_cov_0.880000_g70027_i0 PRJNA890871 70162 248 0.88 2.1824 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 381 2.519999999999999e-101   NTclustered gi|575456455|gb|CP007128.1| 861299 g70027 i0 94.355 70.6088709677419 248 14 100 0 1 248 3905743 3905496 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 17511 381 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
5967746 5967746 PRJNA890871_P_NODE_40165_length_282_cov_1.244019_g40030_i0 PRJNA890871 40165 282 1.244019 3.50813358 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 135 2.5100000000000004e-27   NTclustered gi|575456455|gb|CP007128.1| 861299 g40030 i0 91 2.62056737588652 100 9 35 0 174 273 4674697 4674796 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 739 135 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
20369109 20369109 PRJNA890871_P_NODE_80036_length_243_cov_2.200000_g79901_i0 PRJNA890871 80036 243 2.2 5.346 Gemmatimonas 173479 Bacteria Bacteria 75 4.67e-9   NTclustered gi|2874253995|emb|OY970320.1| 246130 g79901 i0 86.111 14.917695473251 72 7 29 2 164 233 515360 515290 MAG: uncultured Gemmatimonadaceae bacterium isolate MFD00031.bin.c.2 genome assembly, chromosome: 1 blastn 3625 75 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;