RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA890871" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA890871 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18714995 18714995 PRJNA890871_P_NODE_1335_length_1780_cov_3.846514_g1246_i0 PRJNA890871 1335 1780 3.846514 68.4679492 Arcobacter acticola 1849015 Bacteria Bacteria 58.4 0.004   NTclustered gi|1845963640|gb|CP042652.1| 1849015 g1246 i0 97.059 0.0191011235955056 34 1 2 0 1363 1396 740726 740759 Arcobacter acticola strain KCTC 52212 chromosome, complete genome blastn 34 58.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter acticola
21266379 21266379 PRJNA890871_P_NODE_39077_length_284_cov_1.412322_g38942_i0 PRJNA890871 39077 284 1.412322 4.01099448 Aliarcobacter cryaerophilus 28198 Bacteria Bacteria 202 2.459999999999999e-47   NTclustered gi|1679706893|gb|CP021072.1| 1032070 g38942 i0 86.631 62.8098591549296 187 19 65 4 43 226 1624132 1623949 Arcobacter cryaerophilus ATCC 43158 strain LMG 9904 genome blastn 17838 202 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus
21644845 21644845 PRJNA890871_P_NODE_70957_length_247_cov_2.522989_g70822_i0 PRJNA890871 70957 247 2.522989 6.23178283 Bacteria 2 Bacteria Bacteria 457 4.05e-124   NTclustered gi|972488604|gb|CP010480.1| 197 g70822 i0 100 345.008097165992 247 0 100 0 1 247 1666926 1667172 Campylobacter jejuni strain CJ677CC524, complete genome blastn 85217 457 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;