RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA890871" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA890871 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4692537 4692537 PRJNA890871_P_NODE_28044_length_319_cov_1.719512_g27909_i0 PRJNA890871 28044 319 1.719512 5.48524328 Halorubrum sp. DM2 2527867 Archaea Archaea 54.7 0.008   NTclustered gi|2474087799|emb|LR594487.1| 2527867 g27909 i0 100 0.0909090909090909 29 0 9 0 21 49 2285676 2285648 Halorubrum sp. DM2 isolate Halorubrum diamantensis DM21 genome assembly, chromosome: 1 blastn 29 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. DM2
8517435 8517435 PRJNA890871_P_NODE_44987_length_274_cov_1.318408_g44852_i0 PRJNA890871 44987 274 1.318408 3.61243792 Halobaculum rubrum 2872158 Archaea Archaea 56.5 0.002   NTclustered gi|2090002430|gb|CP082284.1| 2872158 g44852 i0 97.059 0.124087591240876 34 0 12 1 238 270 2015418 2015451 Halobaculum rubrum strain C46 chromosome, complete genome blastn 34 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobaculum Halobaculum rubrum
9793394 9793394 PRJNA890871_P_NODE_93408_length_210_cov_4.145985_g93273_i0 PRJNA890871 93408 210 4.145985 8.7065685 Methanosarcina sp. Kolksee 1434099 Archaea Archaea 54.7 0.005   NTclustered gi|805394978|gb|CP009524.1| 1434099 g93273 i0 100 0.138095238095238 29 0 14 0 19 47 991096 991068 Methanosarcina sp. Kolksee, complete genome blastn 29 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp. Kolksee

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;