RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA889065" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA889065 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
863391 863391 PRJNA889065_S_NODE_30041_length_176_cov_1.037594_g29803_i0 PRJNA889065 30041 176 1.037594 1.82616544 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 126 8.63e-25   NTclustered gi|56753406|gb|AY813175.1| 6182 g29803 i0 95 73.5909090909091 80 4 45 0 97 176 600 521 Schistosoma japonicum SJCHGC06398 protein mRNA, complete cds blastn 12952 126 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
2138769 2138769 PRJNA889065_S_NODE_16442_length_239_cov_11.306122_g16204_i0 PRJNA889065 16442 239 11.306122 27.02163158 Dugesia japonica 6161 Platyhelminthes Platyhelminthes 148 2.66e-31   NTclustered gi|393794643|dbj|AK389067.1| 6161 g16204 i0 83.544 3.89121338912134 158 26 66 0 72 229 43 200 Dugesia japonica cDNA, clone: Dj_aH_000_07236HH.full, full-insert sequence, expressed in adult head blastn 930 148 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Dugesia Dugesia japonica
7241420 7241420 PRJNA889065_S_NODE_15206_length_249_cov_1.553398_g14968_i0 PRJNA889065 15206 249 1.553398 3.86796102 Luteostriata sp. CO-2013 1334173 Platyhelminthes Platyhelminthes 154 6.01e-33   NTclustered gi|507187302|gb|KC608249.1| 1334173 g14968 i0 79.545 31.5823293172691 220 41 87 4 28 244 206 424 Luteostriata sp. CO-2013 voucher MZUSP PL 668 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial blastn 7864 154 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Geoplanidae Luteostriata Luteostriata sp. CO-2013
12342451 12342451 PRJNA889065_S_NODE_16930_length_236_cov_2.424870_g16692_i0 PRJNA889065 16930 236 2.42487 5.7226932 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 414 2.34e-111   NTclustered gi|68479954|gb|DQ076149.1| 6182 g16692 i0 98.305 1 236 4 100 0 1 236 322 87 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 236 414 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
13617008 13617008 PRJNA889065_S_NODE_20711_length_214_cov_1.409357_g20473_i0 PRJNA889065 20711 214 1.409357 3.01602398 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 200 6.36e-47   NTclustered gi|60601967|gb|AY811552.1| 6182 g20473 i0 92.199 63.9345794392523 141 11 66 0 1 141 191 331 Schistosoma japonicum SJCHGC08991 protein mRNA, partial cds blastn 13682 200 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
18714706 18714706 PRJNA889065_S_NODE_20855_length_213_cov_1.958824_g20617_i0 PRJNA889065 20855 213 1.958824 4.17229512 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 383 5.8499999999999996e-102   NTclustered gi|60598655|gb|AY809988.1| 6182 g20617 i0 99.061 112 213 2 100 0 1 213 430 642 Schistosoma japonicum SJCHGC09533 protein mRNA, partial cds blastn 23856 383 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
19989956 19989956 PRJNA889065_S_NODE_19316_length_221_cov_5.702247_g19078_i0 PRJNA889065 19316 221 5.702247 12.60196587 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 392 1.0199999999999999e-104   NTclustered gi|60698688|gb|AY915747.1| 6182 g19078 i0 98.643 2.3710407239819 221 3 100 0 1 221 120 340 Schistosoma japonicum SJCHGC09661 protein mRNA, partial cds blastn 524 392 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
21644345 21644345 PRJNA889065_S_NODE_19997_length_217_cov_20.827586_g19759_i0 PRJNA889065 19997 217 20.827586 45.19586162 Polycladida 6163 Platyhelminthes Platyhelminthes 172 1.41e-38   NTclustered gi|588313890|gb|KC869848.1| 1468236 g19759 i0 81.106 100.539170506912 217 40 100 1 1 217 3067 2852 Chromyella sp. n. CEL-2014 28S ribosomal RNA gene, partial sequence blastn 21817 172 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Polycladida Amyellidae Chromyella Chromyella sp. n. CEL-2014

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;