RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA889065" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA889065 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
863386 863386 PRJNA889065_S_NODE_28641_length_180_cov_3.875912_g28403_i0 PRJNA889065 28641 180 3.875912 6.9766416 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.015   NTclustered gi|1557394408|emb|LR031564.1| 45931 g28403 i0 100 0.155555555555556 28 0 16 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
2138774 2138774 PRJNA889065_S_NODE_16942_length_236_cov_2.222798_g16704_i0 PRJNA889065 16942 236 2.222798 5.24580328 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.021   NTclustered gi|1557394408|emb|LR031564.1| 45931 g16704 i0 100 0.11864406779661 28 0 12 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
2138876 2138876 PRJNA889065_S_NODE_4722_length_429_cov_67.380829_g4485_i0 PRJNA889065 4722 429 67.380829 289.06375641 Pratylenchus vulnus 45931 Nematoda Nematoda 56.5 0.003   NTclustered gi|1557394408|emb|LR031564.1| 45931 g4485 i0 100 0.0699300699300699 30 0 7 0 1 30 23 52 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
3414136 3414136 PRJNA889065_S_NODE_23943_length_199_cov_0.884615_g23705_i0 PRJNA889065 23943 199 0.884615 1.76038385 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.017   NTclustered gi|1557394408|emb|LR031564.1| 45931 g23705 i0 100 0.14070351758794 28 0 14 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
4691760 4691760 PRJNA889065_S_NODE_2544_length_542_cov_158.515030_g2327_i0 PRJNA889065 2544 542 158.51503 859.1514626 Strongyloides papillosus 174720 Nematoda Nematoda 202 5e-47   NTclustered gi|690018840|emb|LM526136.1| 174720 g2327 i0 79.649 4.96863468634686 285 54 52 4 149 431 8041 7759 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000493 blastn 2693 202 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
9791356 9791356 PRJNA889065_S_NODE_5708_length_394_cov_6.458689_g5470_i0 PRJNA889065 5708 394 6.458689 25.44723466 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.01   NTclustered gi|1557394408|emb|LR031564.1| 45931 g5470 i0 100 0.0736040609137056 29 0 7 0 366 394 51 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
13617083 13617083 PRJNA889065_S_NODE_4011_length_458_cov_14.255422_g3777_i0 PRJNA889065 4011 458 14.255422 65.28983276 Pratylenchus vulnus 45931 Nematoda Nematoda 56.5 0.003   NTclustered gi|1557394408|emb|LR031564.1| 45931 g3777 i0 100 0.0655021834061135 30 0 7 0 429 458 52 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;