RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA889065" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA889065 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
863345 863345 PRJNA889065_S_NODE_20681_length_214_cov_1.842105_g20443_i0 PRJNA889065 20681 214 1.842105 3.9421047 Arcobacter porcinus 1935204 Bacteria Bacteria 54.7 0.005   NTclustered gi|1739646276|gb|CP036246.2| 1935204 g20443 i0 94.444 0.168224299065421 36 1 16 1 121 155 644646 644611 Arcobacter porcinus strain CCUG 56899 chromosome, complete genome blastn 36 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter porcinus
8895107 8895107 PRJNA889065_S_NODE_4347_length_445_cov_3.485075_g4113_i0 PRJNA889065 4347 445 3.485075 15.50858375 Campylobacter 194 Bacteria Bacteria 54.7 0.012   NTclustered gi|1153133932|gb|CP012548.1| 1660067 g4113 i0 100 0.325842696629214 29 0 7 0 253 281 883498 883526 Campylobacter pinnipediorum subsp. pinnipediorum strain RM17262 chromosome, complete genome blastn 145 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter pinnipediorum
16166007 16166007 PRJNA889065_S_NODE_10993_length_289_cov_2.764228_g10755_i0 PRJNA889065 10993 289 2.764228 7.98861892 Campylobacterota bacterium DY0563 3396279 Bacteria Bacteria 60.2 1.6e-4   NTclustered gi|2901665857|gb|CP179914.1| 3396279 g10755 i0 100 0.608996539792388 32 0 11 0 98 129 833143 833112 Campylobacterota bacterium DY0563 chromosome, complete genome blastn 176 60.2 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium DY0563
23815518 23815518 PRJNA889065_S_NODE_20299_length_216_cov_1.722543_g20061_i0 PRJNA889065 20299 216 1.722543 3.72069288 Campylobacter concisus 199 Bacteria Bacteria 52.8 0.019   NTclustered gi|1376253191|gb|CP021643.1| 199 g20061 i0 100 0.12962962962963 28 0 13 0 79 106 12463 12436 Campylobacter concisus strain P2CDO4 plasmid pICON, complete sequence blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;