RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA889065" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA889065 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5070274 5070274 PRJNA889065_S_NODE_35504_length_160_cov_1.692308_g35266_i0 PRJNA889065 35504 160 1.692308 2.7076928 Cystofilobasidium 5410 Fungi Fungi 296 5.55e-76   NTclustered gi|406210|dbj|D12805.1|LECSSRD5 5412 g35266 i0 100 101.025 160 0 100 0 1 160 592 751 Cystofilobasidium lari-marini gene for 18S ribosomal RNA, partial sequence blastn 16164 296 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Cystofilobasidiales Cystofilobasidiaceae Cystofilobasidium Cystofilobasidium capitatum
5966681 5966681 PRJNA889065_S_NODE_33845_length_164_cov_3.603306_g33607_i0 PRJNA889065 33845 164 3.603306 5.90942184 Filobasidium floriforme 5210 Fungi Fungi 126 7.9499999999999995e-25   NTclustered gi|2185522900|ref|XM_046184655.1| 5210 g33607 i0 83.212 10.1158536585366 137 23 84 0 17 153 757 621 Filobasidium floriforme 60s ribosomal protein l11 (HD553DRAFT_99389), mRNA blastn 1659 126 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Filobasidiales Filobasidiaceae Filobasidium Filobasidium floriforme
11066840 11066840 PRJNA889065_S_NODE_18529_length_226_cov_1.830601_g18291_i0 PRJNA889065 18529 226 1.830601 4.13715826 Meira miltonrushii 1280837 Fungi Fungi 102 1.97e-17   NTclustered gi|1418868707|ref|XM_025497778.1| 1280837 g18291 i0 84.466 2.32300884955752 103 16 46 0 85 187 830 728 Meira miltonrushii putative serine/threonine protein phosphatase PP1 (FA14DRAFT_155715), partial mRNA blastn 525 102 1 Eukaryota Opisthokonta Fungi Basidiomycota Exobasidiomycetes Exobasidiales Brachybasidiaceae Meira Meira miltonrushii
18714760 18714760 PRJNA889065_S_NODE_34735_length_162_cov_1.781513_g34497_i0 PRJNA889065 34735 162 1.781513 2.88605106 Kockovaella imperatae 4999 Fungi Fungi 54.7 0.004   NTclustered gi|1227126969|ref|XM_022018878.1| 4999 g34497 i0 100 0.179012345679012 29 0 18 0 1 29 1122 1150 Kockovaella imperatae NUC169 domain-domain-containing protein (BD324DRAFT_658159), partial mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Cuniculitremaceae Kockovaella Kockovaella imperatae
22540207 22540207 PRJNA889065_S_NODE_28518_length_181_cov_1.644928_g28280_i0 PRJNA889065 28518 181 1.644928 2.97731968 Suillus luteus 5384 Fungi Fungi 52.8 0.015   NTclustered gi|998623171|emb|LN999935.1| 5384 g28280 i0 100 0.154696132596685 28 0 15 0 1 28 3 30 Suillus luteus mRNA for Isocitrate lyase (ICL gene), isolate sp9 blastn 28 52.8 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Boletales Suillaceae Suillus Suillus luteus
22919809 22919809 PRJNA889065_S_NODE_29158_length_179_cov_1.014706_g28920_i0 PRJNA889065 29158 179 1.014706 1.81632374 Malassezia 55193 Fungi Fungi 326 8.09e-85   NTclustered gi|915512619|gb|KP825402.1| 76775 g28920 i0 99.441 98.4916201117318 179 1 100 0 1 179 17 195 Malassezia restricta strain ISOSEB46F 28S ribosomal RNA gene, partial sequence blastn 17630 326 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;