RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA889065" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA889065 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8895035 8895035 PRJNA889065_S_NODE_10027_length_302_cov_1.776062_g9789_i0 PRJNA889065 10027 302 1.776062 5.36370724 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|2785763366|ref|XM_067216642.1| 5824 g9789 i0 96.97 0.218543046357616 33 1 11 0 136 168 451 419 Plasmodium brasilianum SNARE associated Golgi protein (MKS88_003542), partial mRNA blastn 66 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium brasilianum
12342511 12342511 PRJNA889065_S_NODE_31990_length_170_cov_1.086614_g31752_i0 PRJNA889065 31990 170 1.086614 1.8472438 Plasmodium chabaudi 5825 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.014   NTclustered gi|1027953362|ref|XM_735395.2| 31271 g31752 i0 100 0.164705882352941 28 0 16 0 54 81 2369 2342 Plasmodium chabaudi chabaudi conserved Plasmodium protein, unknown function (PCHAS_0624300), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi
19989977 19989977 PRJNA889065_S_NODE_23696_length_200_cov_1.171975_g23458_i0 PRJNA889065 23696 200 1.171975 2.34395 Plasmodium relictum 85471 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.017   NTclustered gi|1620141828|ref|XM_028676858.1| 85471 g23458 i0 100 0.14 28 0 14 0 110 137 1392 1365 Plasmodium relictum transcription factor with AP2 domain(s), putative (AP2-O), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium relictum
22919756 22919756 PRJNA889065_S_NODE_11198_length_286_cov_20.201646_g10960_i0 PRJNA889065 11198 286 20.201646 57.77670756 root 1 Root_unresolved Root_unresolved 451 2.23e-122   NTclustered gi|833494855|ref|XM_012915027.1| 5866 g10960 i0 95.122 1430.34615384615 287 12 100 2 1 286 215 500 Babesia bigemina hypothetical protein, conserved partial mRNA blastn 409079 451 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia bigemina
23815457 23815457 PRJNA889065_S_NODE_10399_length_297_cov_1.377953_g10161_i0 PRJNA889065 10399 297 1.377953 4.09252041 Eimeria maxima 5804 SAR_Eukaryotes SAR_Eukaryotes 58.4 5.93e-4   NTclustered gi|915125688|ref|XM_013478654.1| 5804 g10161 i0 100 1.88888888888889 31 0 10 0 120 150 535 565 Eimeria maxima hypothetical protein, conserved partial mRNA blastn 561 58.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima
23815604 23815604 PRJNA889065_S_NODE_7119_length_354_cov_5.774920_g6881_i0 PRJNA889065 7119 354 5.77492 20.4432168 Eimeria tenella 5802 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.003   NTclustered gi|916416283|ref|XM_013373919.1| 5802 g6881 i0 100 0.242937853107345 30 0 8 0 312 341 594 623 Eimeria tenella uncharacterized protein (ETH_00000385), partial mRNA blastn 86 56.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria tenella

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;