RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA889065" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA889065 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2517801 2517801 PRJNA889065_S_NODE_39762_length_150_cov_1.719626_g39524_i0 PRJNA889065 39762 150 1.719626 2.579439 Fusobacterium 848 Bacteria Bacteria 52.8 0.012   NTclustered gi|2705042081|gb|CP085192.1| 856 g39524 i0 100 0.56 28 0 19 0 118 145 3027296 3027269 Fusobacterium varium strain SB069 chromosome blastn 84 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium
14891289 14891289 PRJNA889065_S_NODE_13952_length_259_cov_2.504630_g13714_i0 PRJNA889065 13952 259 2.50463 6.4869917 Fusobacteriaceae bacterium 2053555 Bacteria Bacteria 52.8 0.024   NTclustered gi|2892346784|dbj|AP035781.1| 2053555 g13714 i0 100 0.108108108108108 28 0 11 0 175 202 75593 75620 Fusobacteriaceae bacterium 9N8 DNA, complete genome blastn 28 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae   Fusobacteriaceae bacterium
17819759 17819759 PRJNA889065_S_NODE_32094_length_169_cov_3.103175_g31856_i0 PRJNA889065 32094 169 3.103175 5.24436575 Leptotrichia 32067 Bacteria Bacteria 56.5 0.001   NTclustered gi|1708579770|dbj|AP019840.1| 109328 g31856 i0 90.698 0.763313609467456 43 3 25 1 40 81 2424255 2424213 Leptotrichia trevisanii JMUB3935 DNA, complete genome blastn 129 56.5 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia trevisanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;