RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA889065" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA889065 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11066914 11066914 PRJNA889065_S_NODE_35109_length_161_cov_1.694915_g34871_i0 PRJNA889065 35109 161 1.694915 2.72881315 Trebouxia lynnae 1825957 Plants Plants 189 9.77e-44   NTclustered gi|1750939486|gb|MH917293.1| 1825957 g34871 i0 87.64 60.6086956521739 178 3 99 4 1 159 17516 17693 Trebouxia sp. TR9 mitochondrion, complete genome blastn 9758 189 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
12342518 12342518 PRJNA889065_S_NODE_35110_length_161_cov_1.686441_g34872_i0 PRJNA889065 35110 161 1.686441 2.71517001 Trebouxia sp. SL0000003 3350044 Plants Plants 215 1.61e-51   NTclustered gi|2917930141|emb|OZ234926.1| 3350044 g34872 i0 93.243 3.71428571428571 148 7 92 3 14 161 110362 110506 Trebouxia sp. SL0000003 genome assembly, organelle: mitochondrion blastn 598 215 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
17819700 17819700 PRJNA889065_S_NODE_1014_length_763_cov_17.087500_g875_i0 PRJNA889065 1014 763 17.0875 130.377625 Trebouxiophyceae 75966 Plants Plants 63.9 3.54e-5   NTclustered gi|371782132|emb|HE610164.1| 33092 g875 i0 95 8.09305373525557 40 2 5 0 326 365 76 37 Koliella longiseta plastid partial 23S rRNA gene, strain SAG 470-1 blastn 6175 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;