RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA888821" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_kingdom 2

tax_superkingdom 1

  • Archaea · 4 ✖

bioproject 1

  • PRJNA888821 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4691514 4691514 PRJNA888821_P_NODE_46724_length_215_cov_11.591549_g46641_i0 PRJNA888821 46724 215 11.591549 24.92183035 Saccharolobus islandicus 43080 Archaea Archaea 300 6.13e-77   NTclustered gi|323473489|gb|CP002425.1| 930945 g46641 i0 91.102 78.646511627907 236 0 100 1 1 215 890958 890723 Sulfolobus islandicus REY15A, complete genome blastn 16909 300 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus islandicus
7241087 7241087 PRJNA888821_P_NODE_39406_length_241_cov_0.916667_g39323_i0 PRJNA888821 39406 241 0.916667 2.20916747 uncultured archaeon 115547 Archaea Archaea 446 8.519999999999999e-121   NTclustered gi|590074738|gb|KF975577.1| 115547 g39323 i0 100 103.174273858921 241 0 100 0 1 241 1185 1425 Uncultured archaeon clone FMSA5 16S ribosomal RNA gene, partial sequence blastn 24865 446 1 Archaea               uncultured archaeon
14890774 14890774 PRJNA888821_P_NODE_2932_length_395_cov_1.434783_g2851_i0 PRJNA888821 2932 395 1.434783 5.66739285 Methanobacterium formicicum 2162 Archaea Archaea 667 0   NTclustered gi|952971377|emb|LN734822.1| 2162 g2851 i0 99.455 3.78481012658228 367 2 93 0 29 395 1258154 1258520 Methanobacterium formicicum genome assembly isolate Mb9, chromosome : I blastn 1495 667 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
23815076 23815076 PRJNA888821_P_NODE_33879_length_254_cov_1.607735_g33796_i0 PRJNA888821 33879 254 1.607735 4.0836469 Haloferax sp. S1W 3377110 Archaea Archaea 363 9.379999999999998e-96   NTclustered gi|2845113841|gb|CP172600.1| 3377110 g33796 i0 92.8 1.96850393700787 250 18 98 0 5 254 49973 50222 Haloferax sp. S1W plasmid pHFX5, complete sequence blastn 500 363 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax sp. S1W

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;