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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA888821" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA888821 · 9 ✖

analysis 1

  • blastn · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2138249 2138249 PRJNA888821_P_NODE_29322_length_273_cov_2.145000_g29240_i0 PRJNA888821 29322 273 2.145 5.85585 Caenorhabditis elegans 6239 Nematoda Nematoda 499 7.45e-137   NTclustered gi|28396069|gb|AY204194.1| 6239 g29240 i0 99.634 99.7106227106227 273 1 100 0 1 273 922 650 Caenorhabditis elegans clone yk805b2 nuclear receptor (NHR-108) pseudogene mRNA, complete sequence blastn 27221 499 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
3413688 3413688 PRJNA888821_P_NODE_35643_length_249_cov_0.875000_g35560_i0 PRJNA888821 35643 249 0.875 2.17875 Caenorhabditis elegans 6239 Nematoda Nematoda 460 3.16e-125   NTclustered gi|687865759|emb|LK927600.1| 6239 g35560 i0 100 3.65461847389558 249 0 100 0 1 249 65832 66080 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000065 blastn 910 460 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
4691212 4691212 PRJNA888821_P_NODE_29124_length_274_cov_1.014925_g29042_i0 PRJNA888821 29124 274 1.014925 2.7808945 Caenorhabditis elegans 6239 Nematoda Nematoda 501 2.08e-137   NTclustered gi|1972266898|ref|NM_001028105.7| 6239 g29042 i0 99.635 8 274 1 100 0 1 274 4227 3954 Caenorhabditis elegans Vitellogenin-6 (vit-6), partial mRNA blastn 2192 501 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
8515820 8515820 PRJNA888821_P_NODE_37007_length_246_cov_0.890173_g36924_i0 PRJNA888821 37007 246 0.890173 2.18982558 Caenorhabditis elegans 6239 Nematoda Nematoda 455 1.4500000000000002e-123   NTclustered gi|351020686|emb|FO080294.1| 6239 g36924 i0 100 8.79268292682927 246 0 100 0 1 246 9348 9593 Caenorhabditis elegans Cosmid F26F12, complete sequence blastn 2163 455 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
9790884 9790884 PRJNA888821_P_NODE_3728_length_366_cov_1.313993_g3647_i0 PRJNA888821 3728 366 1.313993 4.80921438 Caenorhabditis elegans 6239 Nematoda Nematoda 676 0   NTclustered gi|25167357|ref|NR_000053.1| 6239 g3647 i0 100 92.1530054644809 366 0 100 0 1 366 385 20 Caenorhabditis elegans 18S ribosomal RNA (rrn-1.1), rRNA blastn 33728 676 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
12342372 12342372 PRJNA888821_P_NODE_650_length_637_cov_3.191489_g580_i0 PRJNA888821 650 637 3.191489 20.32978493 Sudhausia aristotokia 1357959 Nematoda Nematoda 119 6.15e-22   NTclustered gi|675118807|gb|KJ877278.1| 1357959 g580 i0 79.33 20.2684458398744 179 30 27 7 61 234 1421 1597 Sudhausia aristotokia strain RS9011 28S ribosomal RNA gene, partial sequence blastn 12911 119 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Sudhausia Sudhausia aristotokia
18714239 18714239 PRJNA888821_P_NODE_3355_length_378_cov_1.009836_g3274_i0 PRJNA888821 3355 378 1.009836 3.81718008 Caenorhabditis elegans 6239 Nematoda Nematoda 699 0   NTclustered gi|1831513691|ref|NM_069160.6| 6239 g3274 i0 100 10.8359788359788 378 0 100 0 1 378 475 98 Caenorhabditis elegans Nematode cuticle collagen N-terminal domain-containing protein (col-119), partial mRNA blastn 4096 699 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
22539752 22539752 PRJNA888821_P_NODE_38498_length_243_cov_0.905882_g38415_i0 PRJNA888821 38498 243 0.905882 2.20129326 Caenorhabditis elegans 6239 Nematoda Nematoda 449 6.65e-122   NTclustered gi|1831511604|ref|NM_001268223.3| 6239 g38415 i0 100 6.01234567901235 243 0 100 0 1 243 938 1180 Caenorhabditis elegans uncharacterized protein (brp-1), partial mRNA blastn 1461 449 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
23815152 23815152 PRJNA888821_P_NODE_38959_length_242_cov_0.911243_g38876_i0 PRJNA888821 38959 242 0.911243 2.20520806 Caenorhabditis elegans 6239 Nematoda Nematoda 448 2.3799999999999995e-121   NTclustered gi|1418456|emb|Z75530.1| 6239 g38876 i0 100 4 242 0 100 0 1 242 38197 37956 Caenorhabditis elegans Cosmid C47E8, complete sequence blastn 968 448 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;