RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA888821" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA888821 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2517323 2517323 PRJNA888821_P_NODE_2402_length_418_cov_2.231884_g2324_i0 PRJNA888821 2402 418 2.231884 9.32927512 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 750 0   NTclustered gi|126142771|gb|EF070244.1| 5896 g2324 i0 99.043 99.9497607655502 418 4 100 0 1 418 1207 1624 Tetrahymena caudata strain MP49 18S small subunit ribosomal RNA gene, partial sequence blastn 41779 756 0.992063492063492 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena caudata
4691419 4691419 PRJNA888821_P_NODE_41264_length_234_cov_6.732919_g41181_i0 PRJNA888821 41264 234 6.732919 15.75503046 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 337 5.17e-88   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g41181 i0 95.283 5.86752136752137 212 10 91 0 23 234 140 351 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 1373 337 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
7241208 7241208 PRJNA888821_P_NODE_4626_length_340_cov_3.134831_g4544_i0 PRJNA888821 4626 340 3.134831 10.6584254 Tetrahymena rostrata 5909 SAR_Eukaryotes SAR_Eukaryotes 590 5.499999999999999e-164   NTclustered gi|1837628855|gb|MN158348.1| 5909 g4544 i0 97.941 86.3705882352941 340 7 100 0 1 340 4554 4215 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 29366 590 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
11066239 11066239 PRJNA888821_P_NODE_24009_length_295_cov_1.378378_g23927_i0 PRJNA888821 24009 295 1.378378 4.0662151 Sterkiella nova 200597 SAR_Eukaryotes SAR_Eukaryotes 200 9.24e-47   NTclustered gi|13399229|emb|AJ305329.1| 200597 g23927 i0 81.933 0.806779661016949 238 41 80 2 57 293 377 141 Oxytricha nova macronuclear rps26 gene for S26 ribosomal protein blastn 238 200 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Sterkiella Sterkiella nova
12341766 12341766 PRJNA888821_P_NODE_1950_length_445_cov_3.250000_g1875_i0 PRJNA888821 1950 445 3.25 14.4625 Tetrahymena acanthophora 2704174 SAR_Eukaryotes SAR_Eukaryotes 806 0   NTclustered gi|2082965250|gb|MZ827090.1| 2704174 g1875 i0 99.326 81.6 445 3 100 0 1 445 1107 663 Tetrahymena acanthophora isolate NB176 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 36312 806 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena acanthophora
16165656 16165656 PRJNA888821_P_NODE_37013_length_246_cov_0.890173_g36930_i0 PRJNA888821 37013 246 0.890173 2.18982558 Chilodonella hexasticha 1938391 SAR_Eukaryotes SAR_Eukaryotes 394 3.2e-105   NTclustered gi|1389430805|gb|MH341633.1| 1938391 g36930 i0 95.528 3.76422764227642 246 11 100 0 1 246 1961 2206 Chilodonella hexasticha strain C.hexasticha AS large subunit ribosomal RNA gene, partial sequence blastn 926 394 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella hexasticha
21265100 21265100 PRJNA888821_P_NODE_48697_length_209_cov_11.691176_g48614_i0 PRJNA888821 48697 209 11.691176 24.43455784 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 279 7.72e-71   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g48614 i0 91.262 13.8038277511962 206 16 98 2 1 205 49 253 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 2885 279 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
21644316 21644316 PRJNA888821_P_NODE_937_length_556_cov_3.766046_g865_i0 PRJNA888821 937 556 3.766046 20.93921576 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 1022 0   NTclustered gi|1216315|gb|U17356.1|TCU17356 5914 g865 i0 99.82 98.9694244604317 556 1 100 0 1 556 14 569 Tetrahymena corlissi 18S rRNA blastn 55027 1022 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena corlissi
24193220 24193220 PRJNA888821_P_NODE_1839_length_453_cov_3.500000_g1764_i0 PRJNA888821 1839 453 3.5 15.855 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 832 0   NTclustered gi|2624251057|gb|OR858827.1| 5914 g1764 i0 99.779 100.008830022075 453 1 100 0 1 453 532 984 Tetrahymena corlissi isolate LLH20220320 small subunit ribosomal RNA gene, partial sequence blastn 45304 837 0.994026284348865 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena corlissi
25089325 25089325 PRJNA888821_P_NODE_9160_length_310_cov_12.257384_g9078_i0 PRJNA888821 9160 310 12.257384 37.9978904 Trithigmostoma cucullulus 1346499 SAR_Eukaryotes SAR_Eukaryotes 110 1.69e-19   NTclustered gi|759083539|gb|KM222156.1| 1346499 g9078 i0 83.333 27.7483870967742 120 18 38 2 189 307 716 834 Trithigmostoma cucullulus voucher CXM08110902 large subunit ribosomal RNA gene, partial sequence blastn 8602 110 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Trithigmostoma Trithigmostoma cucullulus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;