RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA888821" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA888821 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9790877 9790877 PRJNA888821_P_NODE_36988_length_246_cov_1.335260_g36905_i0 PRJNA888821 36988 246 1.33526 3.2847396 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 433 6.79e-117   NTclustered gi|971146634|emb|LN879502.1| 389348 g36905 i0 98.374 107.577235772358 246 4 100 0 1 246 1250571 1250326 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 26464 433 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
10170416 10170416 PRJNA888821_P_NODE_32168_length_260_cov_14.417112_g32085_i0 PRJNA888821 32168 260 14.417112 37.4844912 Bacteria 2 Bacteria Bacteria 165 2.92e-36   NTclustered gi|2874253712|emb|OY969554.1| 174324 g32085 i0 88.971 297.407692307692 136 11 52 4 127 260 1827353 1827486 MAG: uncultured Chlamydiales bacterium isolate MFD04540.bin.c.3 genome assembly, chromosome: 1 blastn 77326 165 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     uncultured Chlamydiales bacterium
17441437 17441437 PRJNA888821_P_NODE_774_length_595_cov_2.260536_g702_i0 PRJNA888821 774 595 2.260536 13.4501892 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 1083 0   NTclustered gi|971146634|emb|LN879502.1| 389348 g702 i0 99.497 105.356302521008 596 2 100 1 1 595 2474674 2475269 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 62687 1083 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
22919679 22919679 PRJNA888821_P_NODE_518_length_691_cov_13.357605_g454_i0 PRJNA888821 518 691 13.357605 92.30105055 Waddlia 71666 Bacteria Bacteria 481 7.42e-131   NTclustered gi|470485904|ref|NR_076723.1| 71667 g454 i0 89.529 111.408104196816 382 36 91 3 1 380 1461 1082 Waddlia chondrophila strain WSU 86-1044 23S ribosomal RNA gene, complete sequence blastn 76983 481 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae Waddlia Waddlia chondrophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;