RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA888821" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA888821 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3413396 3413396 PRJNA888821_P_NODE_18123_length_310_cov_4.308017_g18041_i0 PRJNA888821 18123 310 4.308017 13.3548527 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 150 9.98e-32   NTclustered gi|2314715370|dbj|AP024673.1| 2682145 g18041 i0 85.034 1.34516129032258 147 22 47 0 163 309 359110 359256 MAG: Fimbriimonadales bacterium KatS3mg018 DNA, complete genome blastn 417 150 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium
3793976 3793976 PRJNA888821_P_NODE_50523_length_204_cov_8.137405_g50440_i0 PRJNA888821 50523 204 8.137405 16.6003062 Chthonomonas 1077265 Bacteria Bacteria 134 6.1800000000000006e-27   NTclustered gi|526641997|ref|NR_103994.1| 454171 g50440 i0 80.11 195.700980392157 181 34 88 2 26 204 2808 2628 Chthonomonas calidirosea strain T49 23S ribosomal RNA gene, complete sequence blastn 39923 134 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae Chthonomonas Chthonomonas calidirosea
13616710 13616710 PRJNA888821_P_NODE_43951_length_225_cov_7.118421_g43868_i0 PRJNA888821 43951 225 7.118421 16.01644725 Capsulimonas corticalis 2219043 Bacteria Bacteria 222 1.44e-53   NTclustered gi|2240447379|dbj|AP025739.1| 2219043 g43868 i0 84.444 288.164444444444 225 35 100 0 1 225 592646 592870 Capsulimonas corticalis AX-7 DNA, complete genome blastn 64837 222 1 Bacteria   Bacillati Armatimonadota Armatimonadia Capsulimonadales Capsulimonadaceae Capsulimonas Capsulimonas corticalis
17441007 17441007 PRJNA888821_P_NODE_31214_length_264_cov_15.287958_g31131_i0 PRJNA888821 31214 264 15.287958 40.36020912 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 106 1.83e-18   NTclustered gi|2314715370|dbj|AP024673.1| 2682145 g31131 i0 81.818 1.18939393939394 132 19 50 5 1 131 2072157 2072030 MAG: Fimbriimonadales bacterium KatS3mg018 DNA, complete genome blastn 314 106 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium
17441102 17441102 PRJNA888821_P_NODE_36294_length_247_cov_11.770115_g36211_i0 PRJNA888821 36294 247 11.770115 29.07218405 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 226 1.2399999999999997e-54   NTclustered gi|2314715370|dbj|AP024673.1| 2682145 g36211 i0 83.471 0.979757085020243 242 40 98 0 3 244 2529226 2529467 MAG: Fimbriimonadales bacterium KatS3mg018 DNA, complete genome blastn 242 226 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium
17819292 17819292 PRJNA888821_P_NODE_22634_length_307_cov_10.025641_g22552_i0 PRJNA888821 22634 307 10.025641 30.77871787 PVC group 1783257 Bacteria Bacteria 71.3 7.91e-8   NTclustered gi|663071213|gb|CP007139.1| 661478 g22552 i0 97.561 2.14983713355049 41 1 14 0 165 205 2209799 2209839 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 660 71.3 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
17819464 17819464 PRJNA888821_P_NODE_38854_length_242_cov_0.911243_g38771_i0 PRJNA888821 38854 242 0.911243 2.20520806 Fimbriimonas 1005038 Bacteria Bacteria 375 1.14e-99   NTclustered gi|663071213|gb|CP007139.1| 661478 g38771 i0 94.65 261.669421487603 243 11 100 2 1 242 29027 28786 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 63324 375 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;