RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA888821" and tax_clade = "SAR92 clade"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • SAR92 clade · 1 ✖

bioproject 1

  • PRJNA888821 · 1 ✖

analysis 1

  • blastn · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21643955 21643955 PRJNA888821_P_NODE_27637_length_280_cov_8.101449_g27555_i0 PRJNA888821 27637 280 8.101449 22.6840572 Gammaproteobacteria 1236 Bacteria Bacteria 261 3.94e-65   NTclustered gi|14334237|gb|AY033301.1| 159788 g27555 i0 85.271 469.246428571429 258 33 92 4 24 280 2332 2079 Uncultured gamma proteobacterium MB11B11 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 131389 261 1 Bacteria SAR92 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Porticoccaceae   uncultured gamma proteobacterium MB11B11

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;