RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA888104" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA888104 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4690657 4690657 PRJNA888104_P_NODE_20164_length_234_cov_0.884848_g20095_i0 PRJNA888104 20164 234 0.884848 2.07054432 Chryseobacterium indologenes 253 Bacteria Bacteria 433 6.41e-117   NTclustered gi|1957908205|gb|CP067044.1| 253 g20095 i0 100 10.7307692307692 234 0 100 0 1 234 3726836 3726603 Chryseobacterium indologenes strain 3125 chromosome, complete genome blastn 2511 433 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium indologenes
5069584 5069584 PRJNA888104_P_NODE_12404_length_290_cov_1.180995_g12335_i0 PRJNA888104 12404 290 1.180995 3.4248855 Flavobacterium 237 Bacteria Bacteria 531 2.83e-146   NTclustered gi|1205046744|gb|MF289255.1| 239 g12335 i0 99.655 104.968965517241 290 1 100 0 1 290 53 342 Flavobacterium sp. strain MMS16-B5 16S ribosomal RNA gene, partial sequence blastn 30441 531 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp.
8894431 8894431 PRJNA888104_P_NODE_8827_length_334_cov_1.947170_g8758_i0 PRJNA888104 8827 334 1.94717 6.5035478 Pedobacter 84567 Bacteria Bacteria 556 5.469999999999999e-154   NTclustered gi|1821195603|gb|CP049868.1| 2714940 g8758 i0 96.707 336.317365269461 334 11 100 0 1 334 882055 881722 Pedobacter sp. HDW13 chromosome, complete genome blastn 112330 556 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter sp. HDW13
13615695 13615695 PRJNA888104_P_NODE_12111_length_293_cov_1.022321_g12042_i0 PRJNA888104 12111 293 1.022321 2.99540053 Sediminibacterium sp. KACHI17 1751071 Bacteria Bacteria 399 8.419999999999998e-107   NTclustered gi|2690291631|dbj|AP029612.1| 1751071 g12042 i0 91.781 207.877133105802 292 16 99 6 2 293 2977903 2977620 Sediminibacterium sp. KACHI17 DNA, complete genome blastn 60908 399 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Sediminibacterium Sediminibacterium sp. KACHI17
14890257 14890257 PRJNA888104_P_NODE_22272_length_230_cov_0.894410_g22203_i0 PRJNA888104 22272 230 0.89441 2.057143 Empedobacter falsenii 343874 Bacteria Bacteria 425 1.05e-114   NTclustered gi|1878091573|gb|CP040908.1| 343874 g22203 i0 100 6.1695652173913 230 0 100 0 1 230 1647251 1647480 Empedobacter falsenii strain 1681-1 chromosome, complete genome blastn 1419 425 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Empedobacter Empedobacter falsenii
14890331 14890331 PRJNA888104_P_NODE_4892_length_437_cov_2.154891_g4823_i0 PRJNA888104 4892 437 2.154891 9.41687367 Reichenbachiella agarivorans 2979464 Bacteria Bacteria 387 1.02e-102   NTclustered gi|2311319784|gb|CP106679.1| 2979464 g4823 i0 82.993 511.647597254005 441 61 99 11 1 433 410830 410396 Reichenbachiella agarivorans strain BKB1-1 chromosome, complete genome blastn 223590 387 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Reichenbachiellaceae Reichenbachiella Reichenbachiella agarivorans
21264148 21264148 PRJNA888104_P_NODE_16717_length_252_cov_1.568306_g16648_i0 PRJNA888104 16717 252 1.568306 3.95213112 Sediminibacterium sp. KACHI17 1751071 Bacteria Bacteria 414 2.53e-111   NTclustered gi|2690291631|dbj|AP029612.1| 1751071 g16648 i0 96.787 246.130952380952 249 6 98 2 3 250 2978211 2977964 Sediminibacterium sp. KACHI17 DNA, complete genome blastn 62025 414 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Sediminibacterium Sediminibacterium sp. KACHI17
24193070 24193070 PRJNA888104_P_NODE_20859_length_232_cov_1.460123_g20790_i0 PRJNA888104 20859 232 1.460123 3.38748536 Flectobacillus 101 Bacteria Bacteria 429 8.2e-116   NTclustered gi|1420811895|gb|MH591747.1| 50419 g20790 i0 100 100.004310344828 232 0 100 0 1 232 516 285 Flectobacillus sp. strain PW22 16S ribosomal RNA gene, partial sequence blastn 23201 429 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Flectobacillaceae Flectobacillus Flectobacillus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;