RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA886442" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA886442 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11065468 11065468 PRJNA886442_P_NODE_3509_length_387_cov_2.716561_g3345_i0 PRJNA886442 3509 387 2.716561 10.51309107 Thecamoebidae sp. strain P126 746911 Discosea other_Eukaryota 582 1.0599999999999999e-161   NTclustered gi|292399457|gb|GU810185.1| 746911 g3345 i0 94.315 56.6382428940568 387 10 100 11 1 387 601 227 Thecamoebidae sp. strain P126 small subunit ribosomal RNA gene, partial sequence blastn 21919 582 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida   Thecamoebidae sp. strain P126
19092938 19092938 PRJNA886442_P_NODE_4155_length_363_cov_1.303448_g3991_i0 PRJNA886442 4155 363 1.303448 4.73151624 Thecamoebida 242543 Discosea other_Eukaryota 610 4.529999999999999e-170   NTclustered gi|827747070|gb|KP277502.1| 343529 g3991 i0 96.765 47.7906336088154 371 3 100 6 1 363 2077 1708 Sappinia diploidea strain sd-D2 18S ribosomal RNA gene, partial sequence blastn 17348 614 0.993485342019544 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Sappinia Sappinia diploidea

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;