RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA885753" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA885753 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8514652 8514652 PRJNA885753_S_NODE_867_length_450_cov_3.053050_g849_i0 PRJNA885753 867 450 3.05305 13.738725 Priestia megaterium 1404 Bacteria Bacteria 52.8 0.044   NTclustered gi|1830450554|gb|CP051128.1| 1404 g849 i0 100 0.0622222222222222 28 0 6 0 377 404 2883836 2883809 Priestia megaterium strain S2 chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Priestia Priestia megaterium
10169938 10169938 PRJNA885753_S_NODE_3688_length_252_cov_0.871508_g3670_i0 PRJNA885753 3688 252 0.871508 2.19620016 Listeria 1637 Bacteria Bacteria 438 1.5e-118   NTclustered gi|2207579355|gb|CP084086.1| 1642 g3670 i0 98.016 99.9960317460317 252 5 100 0 1 252 2150161 2150412 Listeria innocua strain ZM39 chromosome blastn 25199 438 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Listeriaceae Listeria Listeria innocua
18713133 18713133 PRJNA885753_S_NODE_4235_length_246_cov_0.895954_g4217_i0 PRJNA885753 4235 246 0.895954 2.20404684 Clostridium baratii 1561 Bacteria Bacteria 340 4.2299999999999996e-89   NTclustered gi|2695223087|gb|CP124306.1| 1561 g4217 i0 91.803 202.752032520325 244 20 99 0 1 244 3164749 3164506 Clostridium baratii strain C201 chromosome, complete genome blastn 49877 340 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium baratii
21263703 21263703 PRJNA885753_S_NODE_3717_length_252_cov_0.871508_g3699_i0 PRJNA885753 3717 252 0.871508 2.19620016 Listeria innocua 1642 Bacteria Bacteria 466 6.89e-127   NTclustered gi|2027970313|gb|CP071179.1| 1642 g3699 i0 100 100 252 0 100 0 1 252 2246755 2246504 Listeria innocua strain LI47 chromosome, complete genome blastn 25200 466 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Listeriaceae Listeria Listeria innocua

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;